Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2761 ATGGAGGTCCAAAATGATTTATTAGATGATCCAAATTTCCCGATCTTCAACAAAACCCCATTAAATTATTCCGATCTCTTCTCTTCTTTAACCGATCAATGGGCCGATTTGCCTCTCAAACTCAACGATTCCCACGACATGATCGTCTTCAATTCCCTCCATGACGCCGTCGTTTTTGGCCTCTCCCCTCTCGATTCTCTCCACCTGCCGGAGACTTCCTCCGCCGTCAAAACCGAGCCCTTTCCGACCACCACGGCGGAGGCTGCGGAGGCTGCGGCGGCGTCCGCGCCTTTGGTGGCTTGTCGGGGCCGGCGCTACCGTGGGGTGCGGAGGCGGCCGTGGGGGAAGTACGCGTCGGAGATTCGGGATCCGGCCAAGAGTGGCGCACGTGTGTGGCTTGGCACGTACGAGACGGCTGAGGATGCGGCTTTGGCCTACGACCGAGCCGCCTTCAGAATGCGCGGCTCTAAGGCTCTTCTTAACTTCCCTAACCGCATTGGCTCCGGCGACCCGCCGCCGCTTAGAATCTCGGCGCGCCGACGGGAACATGACCTCGTTATGCCTTTGGCTAACGGCGTCGGCGCGGCTAAGAGGAGGAAAGCCGCGGCTGGTAAAGAAGCCGAGCCGGTGAGAGAGACGGAGTCGCGTGTTTTTCAGGTGGGGCCCAAGATGGCTGGGTTGCCAGTTGGCGAGCAGCTATTGGTTAGCTAG 711 59.07 MEVQNDLLDDPNFPIFNKTPLNYSDLFSSLTDQWADLPLKLNDSHDMIVFNSLHDAVVFGLSPLDSLHLPETSSAVKTEPFPTTTAEAAEAAAASAPLVACRGRRYRGVRRRPWGKYASEIRDPAKSGARVWLGTYETAEDAALAYDRAAFRMRGSKALLNFPNRIGSGDPPPLRISARRREHDLVMPLANGVGAAKRRKAAAGKEAEPVRETESRVFQVGPKMAGLPVGEQLLVS 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45999553 46000263 + Lag0019845.1 Lac5g2761 609403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2761 236 SUPERFAMILY DNA-binding domain 105 164 IPR016177 GO:0003677(InterPro)
Lac5g2761 236 Pfam AP2 domain 105 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2761 236 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2761 236 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2761 236 PANTHER DNA-BINDING DOMAIN 86 192 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lac5g2761 236 FunFam Ethylene-responsive transcription factor 2 104 164 - -
Lac5g2761 236 Gene3D AP2/ERF domain 104 165 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2761 236 ProSiteProfiles AP2/ERF domain profile. 105 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2761 236 CDD AP2 113 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2761 236 SMART rav1_2 105 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2326 Lac-Chr11:39301862 Lac5g2761 Lac-Chr5:45999553 1.10E-43 dispersed
Lac5g0363 Lac-Chr5:3761186 Lac5g2761 Lac-Chr5:45999553 6.50E-45 dispersed
Lac5g2761 Lac-Chr5:45999553 Lac7g0041 Lac-Chr7:397835 2.10E-25 dispersed
Lac5g2761 Lac-Chr5:45999553 Lac5g2762 Lac-Chr5:46016971 1.30E-22 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23918 PF00847 AP2 2.00E-13 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2761 K09286 - rcu:8289660 184.111