Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g2771 | ATGACCCAGTTGCTTAATCTTGCTCTTGGAGTGGTTGCAGTTGCAGTTTTGGTCATTCTTCTTCTTGTCTTCATGAACAGAAGGGGAAAGGGGAAGGATGAATACAATGACATTGAGAGGAGGCAGCAGAGAGAGAAGGGGGAAGAAGAGAGAGAAGAATTGGTCACTTTTCAAGGTGGGCAGGACCTTACCATTGTGGATATATTGGAAGCTCCTGGGGAAGTCATTGGAAAAGCCAACCATGGAACTTTGTACAAGGCCTATTTGCAGGGAAGCAGCACAGTGAGGCTGCTGAGGTTTCTGAGGCCAGTTTGTACTACTGGACTTGAAGACTTTGTCAGTGAGATTGAGTTTTTGGGCTCCATTAGGCATCCAAATTTGGTGCCTCTTTTGGGATTCTATTCTGGTCCAAGAGCAGAGAAGCTTCTCATTCATCCTTTTTACAGGAGAGGAAATCTGGCTGAGTTCATTAGAGATGGGAATGGCGACTCGCACCGATGGGGAGTAATAAACAAGATCTCGGTTGGTATAGCGAAAGGGTTGGATCATCTCCACACTGGCCTGCAAAAGCCAACAATCCATGGGAATCTGCAGTCGAAAAATGTTCTTTTGGATCGAAACTATGAACCGTATATCTCAGATTTCGGCCTACATTTACTGTTGAATTCCTCTTCTGCACAAGAGGTACTTGAAGCTTCAGCAGCCAATGGCTACAAAGCTCCTGAGCTGATCAAGATGAAAGATGCAACTGAGGAGACTGATATCTATAGCTATGGGGTGATCTTACTCGAGTTACTGTCCGGTAAGGAACCGATCAACGAAAAGCCGACTCCTGATGAGGATTTTTACTTGCCTAACTTTATGAGAAATGCAGTTCTTGGACATAGAATTGCAGATTTGTTCCATCCAGAAATACTTCTATATAGCAGCATTGATGGAAACCATGTTACTGAAGAAAAGATTCTCAAATTCTTTCAGCTTGCTATGGCTTGTTGTTCTCCTTCTCCTGCTCTTAGACCTAGTATGAAACAAGTGCTACGGAAGCTCAACGAAATCGGAACATGA | 1065 | 43.94 | MTQLLNLALGVVAVAVLVILLLVFMNRRGKGKDEYNDIERRQQREKGEEEREELVTFQGGQDLTIVDILEAPGEVIGKANHGTLYKAYLQGSSTVRLLRFLRPVCTTGLEDFVSEIEFLGSIRHPNLVPLLGFYSGPRAEKLLIHPFYRRGNLAEFIRDGNGDSHRWGVINKISVGIAKGLDHLHTGLQKPTIHGNLQSKNVLLDRNYEPYISDFGLHLLLNSSSAQEVLEASAANGYKAPELIKMKDATEETDIYSYGVILLELLSGKEPINEKPTPDEDFYLPNFMRNAVLGHRIADLFHPEILLYSSIDGNHVTEEKILKFFQLAMACCSPSPALRPSMKQVLRKLNEIGT | 354 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 46111174 | 46112520 | + | Lag0019855.1 | Lac5g2771 | 609413 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g2771 | 354 | ProSiteProfiles | Protein kinase domain profile. | 70 | 354 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac5g2771 | 354 | Pfam | Protein tyrosine and serine/threonine kinase | 74 | 349 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac5g2771 | 354 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 20 | 353 | IPR052451 | - | |
| Lac5g2771 | 354 | SUPERFAMILY | Protein kinase-like (PK-like) | 73 | 349 | IPR011009 | - | |
| Lac5g2771 | 354 | Gene3D | Transferase(Phosphotransferase) domain 1 | 149 | 354 | - | - | |
| Lac5g2771 | 354 | Gene3D | Phosphorylase Kinase; domain 1 | 39 | 147 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g1754 | Lac-Chr11:31813021 | Lac5g2771 | Lac-Chr5:46111174 | 6.20E-87 | dispersed | |
| Lac4g2022 | Lac-Chr4:39804378 | Lac5g2771 | Lac-Chr5:46111174 | 3.50E-57 | dispersed | |
| Lac5g2771 | Lac-Chr5:46111174 | Lac9g2320 | Lac-Chr9:42535624 | 8.50E-47 | dispersed | |
| Lac5g2771 | Lac-Chr5:46111174 | Lac13g1546 | Lac-Chr13:16031946 | 9.40E-38 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 86224 | PF07714 | PK_Tyr_Ser-Thr | 5.10E-32 | CL0016 | Lac | PK |
Pathway information