Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2787 ATGGCCGATTCCAGGGCTCTTCCTCCTCGCTCCGGAGCTGGAATCGTCAGAAGTATCCGCTTGGAGAACTTCATGTGTCATAGCAATTTGCACATTGAGTTTGGCGAGTGGCTTAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCCACGTTGAAGGATTTTATCAAAACTGGTTGCAGTTATGCCGTCATCCAAGTTGAATTGAAAAATAATGGGGCGGATGCTTTTAAGCATGAAATATATGGTGATGTTATAATCATAGAGAGAAGGATTTCTGAAGCCTCCGGTGCCATCGTTTTGAAGGATTCTCAAGGAAAAAAGGTTGCCAGTAGGAGGGACGAACTACGCGAGCTAGTAGAGCATTTTAATATAGATGTTGAGAACCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTTAAGTTCTTTTTCAAGGCTACTCTGCTTCAACAAGTTAATGATCTGTTGAAAAACATTTTTGATCAATTGAGATCTGCAAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTCCAACAATTAAAGAAGAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAACAGCTTCAGGGGCAAAGTGCAAAGATTGAAAAGCTCAAAGATCGCATTCCTGTTTGTCGAGCAAAAATTGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACTTCAGAAGTGAGAAGAATGAAGGATGAATTGCAAGAAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAGGAGGAGCATGGCCGGAAAATGAACTACATCCAAAGTATGGTAAAGCGTGTTAGACTGCTTGAGCAACAAGTTCATGATATTCAAGAGCAGCACATGAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGTTTGAAGCTGCAAAGTCAACAGTTATGAGGTTGAAGGAGGAGGAGACTTCCTTATTGGATAGCCTATACAAAGGGAGGAGTGAAATAAAAAAGATTGCTGAAGAGATTGAAGCTTATGAGAAAAGGCATTACGAATTTTCTCACTCTATTCGAGAGCTAAGGCAGCATCAATCAAACAAGGTTACAGCTTTTGGAGGTGAGAAAGTCCTTCAGTTATTACGCGTGATTGAGAGACAATTTCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGATCAATGGTGACATGTGGGCTCCTGCTGTTGAAAATGCCCTTGGGAGGTTGCTCAATGCTTTCATTGTGACCGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAACGAAGCTAACTATAAGTACCTCCCAATTATCATCTATGACTTTTCAAGACCACTGTTGGATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTAATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTCGTTAAAGATTATGATGTAGGTAAATCAGTTGCATTTGACCAACGAATCTCAAATCTCAAGGAGGTCTTCACATTAGATGGATATAAAATGTTTTCTCGGGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAGACCTAGAAGTGGTAGACTCTGTAGTTCTTTTGATGACCAAATTAAAAGTCTCGAAAAAGATGCATCGAGTGTAAAAGCAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGCTGCAGAAGAACAACTCCGGGATCTTGAAGAGAACCTAGGCAATGTGAAGAATCCAAGTCTTGAAATTCCCAATTAA 1977 41.07 MADSRALPPRSGAGIVRSIRLENFMCHSNLHIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSYAVIQVELKNNGADAFKHEIYGDVIIIERRISEASGAIVLKDSQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVQQLKKKLAWSWVYDVDKQLQGQSAKIEKLKDRIPVCRAKIDHQLGLAEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHGRKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESEFEAAKSTVMRLKEEETSLLDSLYKGRSEIKKIAEEIEAYEKRHYEFSHSIRELRQHQSNKVTAFGGEKVLQLLRVIERQFRRFKKPPIGPIGSHLNLINGDMWAPAVENALGRLLNAFIVTDHRDSLLLRGCANEANYKYLPIIIYDFSRPLLDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFDDQIKSLEKDASSVKAEAEQCRKRKRAAEEQLRDLEENLGNVKNPSLEIPN 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46243112 46252224 + Lag0019871.1 Lac5g2787 609429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2787 658 Coils Coil 611 652 - -
Lac5g2787 658 Coils Coil 338 372 - -
Lac5g2787 658 Gene3D - 15 321 IPR027417 -
Lac5g2787 658 Coils Coil 189 209 - -
Lac5g2787 658 Coils Coil 316 336 - -
Lac5g2787 658 Coils Coil 260 280 - -
Lac5g2787 658 Coils Coil 288 308 - -
Lac5g2787 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 362 IPR027417 -
Lac5g2787 658 Pfam AAA domain 18 246 IPR038729 GO:0006302(InterPro)|GO:0016887(InterPro)
Lac5g2787 658 SUPERFAMILY Smc hinge domain 399 587 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Lac5g2787 658 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 651 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2787 K22804 - - csv:101208493 1103.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2787 Lac-Chr5:46243112 Lac5g2793 Lac-Chr5:46301236 1.20E-150 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g2613 . 52 1092 Structural Maintenance of Chromosomes family AT5G15920 69.2 0.0e+00 1400.6
Lac5g2787 . 10 650 Structural Maintenance of Chromosomes family AT5G07660 59.7 9.5e-219 758.1
Lac5g2789 . 3 368 Structural Maintenance of Chromosomes family AT5G07660 65.8 7.7e-128 456.1
Lac5g2787 . 2 643 Structural Maintenance of Chromosomes family AT5G61460 63.1 3.6e-234 809.3
Lac5g2789 . 3 368 Structural Maintenance of Chromosomes family AT5G61460 69.9 2.9e-135 480.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32