Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2787 ATGGCCGATTCCAGGGCTCTTCCTCCTCGCTCCGGAGCTGGAATCGTCAGAAGTATCCGCTTGGAGAACTTCATGTGTCATAGCAATTTGCACATTGAGTTTGGCGAGTGGCTTAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCCACGTTGAAGGATTTTATCAAAACTGGTTGCAGTTATGCCGTCATCCAAGTTGAATTGAAAAATAATGGGGCGGATGCTTTTAAGCATGAAATATATGGTGATGTTATAATCATAGAGAGAAGGATTTCTGAAGCCTCCGGTGCCATCGTTTTGAAGGATTCTCAAGGAAAAAAGGTTGCCAGTAGGAGGGACGAACTACGCGAGCTAGTAGAGCATTTTAATATAGATGTTGAGAACCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTTAAGTTCTTTTTCAAGGCTACTCTGCTTCAACAAGTTAATGATCTGTTGAAAAACATTTTTGATCAATTGAGATCTGCAAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTCCAACAATTAAAGAAGAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAACAGCTTCAGGGGCAAAGTGCAAAGATTGAAAAGCTCAAAGATCGCATTCCTGTTTGTCGAGCAAAAATTGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACTTCAGAAGTGAGAAGAATGAAGGATGAATTGCAAGAAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAGGAGGAGCATGGCCGGAAAATGAACTACATCCAAAGTATGGTAAAGCGTGTTAGACTGCTTGAGCAACAAGTTCATGATATTCAAGAGCAGCACATGAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATCGGAGTTTGAAGCTGCAAAGTCAACAGTTATGAGGTTGAAGGAGGAGGAGACTTCCTTATTGGATAGCCTATACAAAGGGAGGAGTGAAATAAAAAAGATTGCTGAAGAGATTGAAGCTTATGAGAAAAGGCATTACGAATTTTCTCACTCTATTCGAGAGCTAAGGCAGCATCAATCAAACAAGGTTACAGCTTTTGGAGGTGAGAAAGTCCTTCAGTTATTACGCGTGATTGAGAGACAATTTCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGATCAATGGTGACATGTGGGCTCCTGCTGTTGAAAATGCCCTTGGGAGGTTGCTCAATGCTTTCATTGTGACCGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAACGAAGCTAACTATAAGTACCTCCCAATTATCATCTATGACTTTTCAAGACCACTGTTGGATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTAATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTCGTTAAAGATTATGATGTAGGTAAATCAGTTGCATTTGACCAACGAATCTCAAATCTCAAGGAGGTCTTCACATTAGATGGATATAAAATGTTTTCTCGGGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAGACCTAGAAGTGGTAGACTCTGTAGTTCTTTTGATGACCAAATTAAAAGTCTCGAAAAAGATGCATCGAGTGTAAAAGCAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGCTGCAGAAGAACAACTCCGGGATCTTGAAGAGAACCTAGGCAATGTGAAGAATCCAAGTCTTGAAATTCCCAATTAA 1977 41.07 MADSRALPPRSGAGIVRSIRLENFMCHSNLHIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSYAVIQVELKNNGADAFKHEIYGDVIIIERRISEASGAIVLKDSQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLKNIFDQLRSANALVDDLESTIRPVQQLKKKLAWSWVYDVDKQLQGQSAKIEKLKDRIPVCRAKIDHQLGLAEKLRERFIEKKAQIASMMEKTSEVRRMKDELQETLSLATREKLGLEEEHGRKMNYIQSMVKRVRLLEQQVHDIQEQHMRNTQAEESEIEEKLKELESEFEAAKSTVMRLKEEETSLLDSLYKGRSEIKKIAEEIEAYEKRHYEFSHSIRELRQHQSNKVTAFGGEKVLQLLRVIERQFRRFKKPPIGPIGSHLNLINGDMWAPAVENALGRLLNAFIVTDHRDSLLLRGCANEANYKYLPIIIYDFSRPLLDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFDDQIKSLEKDASSVKAEAEQCRKRKRAAEEQLRDLEENLGNVKNPSLEIPN 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46243112 46252224 + Lag0019871.1 Lac5g2787 609429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2787 658 Coils Coil 611 652 - -
Lac5g2787 658 Coils Coil 338 372 - -
Lac5g2787 658 Gene3D - 15 321 IPR027417 -
Lac5g2787 658 Coils Coil 189 209 - -
Lac5g2787 658 Coils Coil 316 336 - -
Lac5g2787 658 Coils Coil 260 280 - -
Lac5g2787 658 Coils Coil 288 308 - -
Lac5g2787 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 362 IPR027417 -
Lac5g2787 658 Pfam AAA domain 18 246 IPR038729 GO:0006302(InterPro)|GO:0016887(InterPro)
Lac5g2787 658 SUPERFAMILY Smc hinge domain 399 587 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Lac5g2787 658 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 651 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2787 Lac-Chr5:46243112 Lac5g2793 Lac-Chr5:46301236 1.20E-150 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2787 K22804 - csv:101208493 1103.2