Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2789 ATGGCCAAAAATATGGAGCTGCAAGATTTACAGAAGTCACAAGTTGCTGAAACTAGTTCATTACCTTCATCAAATGTTGACGAACTTCATCAAGAAATTTCTAATATCCAAGAGGAGATACAAGAGAATAAGTTGCTTCTGGAAAAGTTTAGAGATAGAATGAAAGAAGCGGAAGCAAAGGCAAAAGATCTTAAAGCATCATTTGAGAATCTGTGTGAGTCAGCGAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGAGATATGATGCAGATTGAACGAGATCTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGCATTATGACTAACAAGGTCCTTTTTGATATCAAAGAGGCAGAGAGACAATATCAGGAGCTTGAGTGCCATCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATGTCCTGAGAGCGAAATTGAGGCTTTAGGTGATTGGGACGGGAGCACACCCGAACAACTCAGTGCACAATTAACAAGGCTAAATCAGAGACTTAATAATGAGACCAGAAGATATTCTGAATCTTTGGAAGACCTGAGGATGATGTATGAGAAAAAGGAGCGTACAATACTAAGAAAACAACAGACTTACAAAGGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAAGCTCTGGAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGCCAATTAACTTGGCAATTTAATGGTCATTTAAGAAAAAAAGGGATCAGTGGAAATATAAAAGTCAATTACGAGGAAAAGACCCTCTCGGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGCGATACACGTGGACTTTCAGGTGGAGAACGGTCATTTTCCACTCTATGCTTCGCTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATCAGCACAAGGTTCCCAATGGATATTTATCACGCCTCATGATATCGGCATGGTAAAACAAGGAGCACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 1107 40.47 MAKNMELQDLQKSQVAETSSLPSSNVDELHQEISNIQEEIQENKLLLEKFRDRMKEAEAKAKDLKASFENLCESAKGEIDAFEEAERDMMQIERDLHSAEKEKDHYEGIMTNKVLFDIKEAERQYQELECHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRYSESLEDLRMMYEKKERTILRKQQTYKGFREKLNACQKALELRWNKFERNANLLKRQLTWQFNGHLRKKGISGNIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFASAQGSQWIFITPHDIGMVKQGARIKKQQMAAPRS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46257544 46260184 + Lag0019873.1 Lac5g2789 609431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2789 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 355 IPR027417 -
Lac5g2789 368 Coils Coil 166 204 - -
Lac5g2789 368 Coils Coil 26 109 - -
Lac5g2789 368 MobiDBLite consensus disorder prediction 1 32 - -
Lac5g2789 368 Gene3D - 144 363 IPR027417 -
Lac5g2789 368 MobiDBLite consensus disorder prediction 7 31 - -
Lac5g2789 368 Coils Coil 118 138 - -
Lac5g2789 368 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 2 366 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2789 K22804 - - csv:101208493 664.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2613 Lac-Chr4:45166423 Lac5g2789 Lac-Chr5:46257544 2.20E-08 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g2613 . 52 1092 Structural Maintenance of Chromosomes family AT5G15920 69.2 0.0e+00 1400.6
Lac5g2787 . 10 650 Structural Maintenance of Chromosomes family AT5G07660 59.7 9.5e-219 758.1
Lac5g2789 . 3 368 Structural Maintenance of Chromosomes family AT5G07660 65.8 7.7e-128 456.1
Lac5g2787 . 2 643 Structural Maintenance of Chromosomes family AT5G61460 63.1 3.6e-234 809.3
Lac5g2789 . 3 368 Structural Maintenance of Chromosomes family AT5G61460 69.9 2.9e-135 480.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32