Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2829 ATGGAGAGGAGTCTTGGGGTGTTGTTGTTTCTTCAGTTCTTTTTACTGTCTTCTTCTGCCTTTTCCAAGCATGCATCTAATGGCATTGATTGGTGGTGCAGAAAAACCACATACCCTGAGACCTGCAAGTATTTCTTCAACAATGGCAGCAAGGCTGTCCCCAAAGATATGTCTGAATTCAAGAAAATGGTGATTCAGTTCGCCATGGAGAGAGCTCTTACTGCTGAGACCCACACTAAGGGTGTCGGTTGGAAGTGCCGAAATGAGAAGGAAAAGGCTGCTTGGGCTGATTGCTTGAAGCTCTACCAAAACACCATCTTTCAGCTCAACCACACTCTGGATTCCTCTACAAAATGTACTGAATTTGATATCCAAACCTGGCTCAGTACCGCCCTAACCAACCTTGAAACATGCCGCACCGGGTTTGCTGAGCTTAATGTTTCGGACTATGTATTGCCGCTGATCACGTCGAACAATGTCACGAAGCTGATAAGTAACAGCTTGGCAGTGAACAATGCTTCAGCTTGGCCAGGGAAAGAGACATATAAAGGGGGTTTTCCAACTTGGCTTTCCGGTGGTGACAGGAGGCTACTGCAGTCATCTCCAATGAAGGCAGACCTTGTGGTGGCTAAGGACGGATCCGGTAACCATACAACCATTGGAGCGGCTCTAGTGGAAGCTGCAAAAAGAAAGACAGATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAACCTCGAGATAGGGAGTAAGATGAAGAATATAATGCTCGTTGGAGATGGAATGAGGTTTACCATCATTACTGGCAATAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGAGAAGGATTTATAGCTCGAGGCATCACATTCCGTAACACTGCTGGTCCTGAAAACCACCAAGCCGTTGCTTTCCGATCTGGTGCAGATCTTTCTGTCTTCTACCGCTGTGCCTTTGAAGGGTATCAGGACACCCTCTATGTCCATTCGCAAAGACAGTTCTATAAGGAGTGTTACATTTACGGCACGGTAGATTTCATATTTGGCAATGCTGCAGTTGTTCTACAGAACTGCATGATTTACGCAAGGAGGCCAATGAATGGTCAGAAAAATGCAGTCACTGCTCAAGGACGGACTGATCCAAATCAAAATACTGGCATTTCAATCCACAATTCACGAGTCATGGCCACAGATGACCTAAAACCAGTGGAGAGCACAGTAAAAACCTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTCGACAGTTTGGTTGATCCAGCAGGTTGGTTGGAGTGGAATGGTGACTTTGCACTGAATACTTTATATTATGGAGAGTATAAGAACATTGGTCCTCGTTCATCAACCAGCCAGAGAGTGAACTGGAAAGGTTACCGTGTTATAAGCAATTCAACTGAGGCATTGGAGTTCACCGTCCAAAATTTCATCGCAGGGCAGTCATGGTTGCCAGGCACAGAGGTCCCATTTACTCCTGGACTCTAG 1557 45.6 MERSLGVLLFLQFFLLSSSAFSKHASNGIDWWCRKTTYPETCKYFFNNGSKAVPKDMSEFKKMVIQFAMERALTAETHTKGVGWKCRNEKEKAAWADCLKLYQNTIFQLNHTLDSSTKCTEFDIQTWLSTALTNLETCRTGFAELNVSDYVLPLITSNNVTKLISNSLAVNNASAWPGKETYKGGFPTWLSGGDRRLLQSSPMKADLVVAKDGSGNHTTIGAALVEAAKRKTDGRFVIQVKRGVYEENLEIGSKMKNIMLVGDGMRFTIITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVAFRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKPVESTVKTYLGRPWKEYSRTVFMKTYLDSLVDPAGWLEWNGDFALNTLYYGEYKNIGPRSSTSQRVNWKGYRVISNSTEALEFTVQNFIAGQSWLPGTEVPFTPGL 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46668782 46670697 - Lag0019913.1 Lac5g2829 609471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2829 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 173 IPR035513 -
Lac5g2829 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 172 IPR035513 -
Lac5g2829 518 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Lac5g2829 518 Pfam Plant invertase/pectin methylesterase inhibitor 29 170 IPR006501 GO:0004857(InterPro)
Lac5g2829 518 NCBIfam pectinesterase inhibitor domain 1 172 IPR006501 GO:0004857(InterPro)
Lac5g2829 518 SMART PMEI_2 24 170 IPR006501 GO:0004857(InterPro)
Lac5g2829 518 Gene3D - 200 518 IPR012334 -
Lac5g2829 518 Pfam Pectinesterase 206 503 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac5g2829 518 FunFam Pectinesterase 200 518 - -
Lac5g2829 518 CDD PMEI-like_3 31 173 - -
Lac5g2829 518 PANTHER PECTINESTERASE 14 508 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac5g2829 518 SUPERFAMILY Pectin lyase-like 201 517 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1717 Lac-Chr11:31201364 Lac5g2829 Lac-Chr5:46668782 3.80E-213 dispersed
Lac5g2829 Lac-Chr5:46668782 Lac7g0343 Lac-Chr7:2660085 1.40E-159 dispersed
Lac5g2829 Lac-Chr5:46668782 Lac5g2830 Lac-Chr5:46674583 4.60E-166 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2829 K01051 - csv:101211449 926.006