Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2830 ATGGATTCACAAAACAAAATTTCAATTTTTTCCATAACCCTTTTGGCAATTCTTTCAAATGTCTCTTCACAAGCAAAATCCACCACTGGCAATGGCAATGGCATTAACAAATGGTGCAAAACGACGCCGCATCCAGATGTTTGCATTCTCTTCATGTCACCGATCAAATCCCCACCCGAAAACCGACCGGAGTTTCGAAAAATGGCCATAAAAACCGCCATGGAGAAGGCCGCCGAGGCTCAAACTTACGCGGCCCGGTTCGGTCCGAGCTGCAAGACCACGCGCCAGAGAGCCGCGTGGGCCGACTGCTTGAAGCTCTACAACGACGCCGTTTTTCAACTGAACCGCACCCTCCAAGGCCTCGCCGGCCGAACCCACGGCCGCCACCGGTGTACGGACTTCGATGCACAAACGTGGCTGAGTTCTGCGCTCACTAACATCGACATGTGCCTCTCCGGCGCGGCGGATCTCAATGTGACGGAATTTATAACTCCGATCAGATGCCAGAAAGTTTCGAAGATGATTAGCAATTGTTTGGCGATTAATGGGAGGTTTTTGGAGGAAGGGGTTAAAAGTGGAGCAAAGGGAGTGGAAAATCAGAATGGGTTTCCGAGATGGGTTTCGAGTGGTGATCGGAAATTGTTGCAGGCGGCGAAGGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGTCTGGGAATTTCCGGTCGGTTCAGGCGGCGATCAACGCCGCCGCGAGGAGGCGGAGGAGGGGCCGATTTGTAATTTACGTAAAGCGAGGGGTTTACAGAGAGAATATTGAAGTTGGAACTAATAATGGGAATTTAATGCTGGTCGGAGATGGGATGAGATTTACAGTGATTACGAGTGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCTGCAACCGCGGGTATCCAAGGGCCAGCTTTCATAGCACGAGACATAGCCTTCGTGAACACGGCCGGTCCCCAGATGGGCCAAGCCGTGGCACTTCGGTCATCGTCGGACTTATCGGTGTTCCACCGGTGCAGCTTTCAGGGCTACCAAGACACACTACTGGTGCTCTCACAGAGACAATTCTACAAGCAATGTTACATCTATGGTACAATCGACTTCATTTTCGGCAACGCCGCAGTTGTTTTACAAAACTGCTTGATTTACGTACGAAGACCCTTAAAGGGTCAAGTCAACGTCATCACGGCCCAAGGTCGAGAGGACCCATTTCAAAACAGTGGAATCTCGATCCACAACTCTCAAATACGGGCCGCCGTCGATTTGCAGCCCATTATTGGGTCGGTCAAAACGTATTTGGGTCGGCCCTGGAAGAAGTATTCACGGACCGTGATCATGAGGAGTTATATTGACAAGTTGGTCAGCCCAATGGGCTGGCTAGCATGGCAAAATAGTAGATTTGCTCAAAATACGTTGTATTATGGGGAGTATAAGAATTTTGGGCCTAGGGCTTCGACCCGGTTTAGAGTGAGATGGCCCGGTTTTCATGCTATTAAAAACCCAAATGTGGCCGCTAAGTTTACCGTTAGGAGACTCATCGCCGGCCAAACTTGGCTACCGGCCACCGGAGTTCCGTTCAAGCTTGGCCTTTGA 1611 50.84 MDSQNKISIFSITLLAILSNVSSQAKSTTGNGNGINKWCKTTPHPDVCILFMSPIKSPPENRPEFRKMAIKTAMEKAAEAQTYAARFGPSCKTTRQRAAWADCLKLYNDAVFQLNRTLQGLAGRTHGRHRCTDFDAQTWLSSALTNIDMCLSGAADLNVTEFITPIRCQKVSKMISNCLAINGRFLEEGVKSGAKGVENQNGFPRWVSSGDRKLLQAAKVRANLVVAKDGSGNFRSVQAAINAAARRRRRGRFVIYVKRGVYRENIEVGTNNGNLMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGPAFIARDIAFVNTAGPQMGQAVALRSSSDLSVFHRCSFQGYQDTLLVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCLIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAVDLQPIIGSVKTYLGRPWKKYSRTVIMRSYIDKLVSPMGWLAWQNSRFAQNTLYYGEYKNFGPRASTRFRVRWPGFHAIKNPNVAAKFTVRRLIAGQTWLPATGVPFKLGL 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46674583 46676924 - Lag0019914.1 Lac5g2830 609472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2830 536 ProSitePatterns Pectinesterase signature 2. 368 377 IPR033131 -
Lac5g2830 536 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857(InterPro)
Lac5g2830 536 CDD PMEI-like_3 38 185 - -
Lac5g2830 536 NCBIfam pectinesterase inhibitor domain 8 182 IPR006501 GO:0004857(InterPro)
Lac5g2830 536 FunFam Pectinesterase 217 536 - -
Lac5g2830 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 185 IPR035513 -
Lac5g2830 536 Gene3D - 217 536 IPR012334 -
Lac5g2830 536 PANTHER PECTINESTERASE 9 527 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac5g2830 536 Pfam Pectinesterase 223 521 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac5g2830 536 SMART PMEI_2 30 181 IPR006501 GO:0004857(InterPro)
Lac5g2830 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 185 IPR035513 -
Lac5g2830 536 SUPERFAMILY Pectin lyase-like 220 535 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2830 Lac-Chr5:46674583 Lac7g0343 Lac-Chr7:2660085 2.10E-134 dispersed
Lac5g2829 Lac-Chr5:46668782 Lac5g2830 Lac-Chr5:46674583 4.60E-166 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2830 K01051 - csv:101213944 823.542