Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2849 ATGGAGGAGAAGGAACCCGGAGTTTCTAGGTTTACAGTTACTAACGATGAAGCCCTAGAGAGCTTCCAGTTAGCTCCAAGAACAGAAACCCTAAAACCAACCGATGAGCCTAAAGTGACGGCGGATGCTGCACCGCCGGCGAGCCTGACGGCTGCTGCACCACCTTCGAGCGCTGCGGCGAATGATACACCACTGGCGAGCGCGGCCGTTTCCAGTACGGAAACAAAAAAGAAGAGAGGGAGGCCGAGGAAGTACGGACCGGACGGGAAGCGCTCACTGTCTCTGGCGCTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACCGGAGAGTTTCCGAACTGGAAACGAGATAACGAGATGTCTCTAGCGATAATCAAGAAGCCACAGAGATTCGAGTTCGAGAATCCCGGTCAGAGACTTGCATATTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACGATGAAGGTTATGTCTTTCTCTCAGCAAGAATCCCGAGCTATTTGCATTCTTTCTGCAAATGGCACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACCTTAACATATGAGGGTCGTTTTGAAATACTTGCATTGACTGGATCGTTTATGCCCACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGCGTCTCACTAGCAGGTCAAGATGGACGAGTCGTTGGAGGTGGGCTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTCGGTAGTTTCCTTCCGGGTCACCAGCAAGAACAGAAGCCAAAGAAGCCTAGAAATGAGTCCACAACCATTTTTTTCCCTCCCATCAACACCATCACTGGTGAAGAAATGAAGGCAATGTACGCTGGTGGTATCAAGCCTATTCTCACAACACCATCCTATCAAGAACACAATCCACCATCGCCAAGCCCGGTGACAGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCTGAACAAGAACCCAAAACACAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1068 49.16 MEEKEPGVSRFTVTNDEALESFQLAPRTETLKPTDEPKVTADAAPPASLTAAAPPSSAAANDTPLASAAVSSTETKKKRGRPRKYGPDGKRSLSLALSPMPISSSIPLTGEFPNWKRDNEMSLAIIKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSFMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPINTITGEEMKAMYAGGIKPILTTPSYQEHNPPSPSPVTGFKISSTDNLPLSEQEPKTQSQSNCEVSC 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46810279 46814054 - Lag0019933.1 Lac5g2849 609491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2849 355 ProSiteProfiles PPC domain profile profile. 146 290 IPR005175 -
Lac5g2849 355 CDD DUF296 150 264 IPR005175 -
Lac5g2849 355 Gene3D - 151 280 - -
Lac5g2849 355 MobiDBLite consensus disorder prediction 311 355 - -
Lac5g2849 355 FunFam AT-hook motif nuclear-localized protein 1-like 151 282 - -
Lac5g2849 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 270 - -
Lac5g2849 355 MobiDBLite consensus disorder prediction 1 94 - -
Lac5g2849 355 MobiDBLite consensus disorder prediction 54 73 - -
Lac5g2849 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 311 IPR039605 GO:0003680(InterPro)
Lac5g2849 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2849 Lac-Chr5:46810279 Lac7g0322 Lac-Chr7:2496090 2.90E-71 dispersed
Lac2g1826 Lac-Chr2:18078212 Lac5g2849 Lac-Chr5:46810279 1.30E-83 transposed
Lac11g2200 Lac-Chr11:38130348 Lac5g2849 Lac-Chr5:46810279 7.00E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2849 - - - 0.0