Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2858 ATGGTTTCTCGATTCCTTATGGCGAGAAGAGGAGGTGCAATTGGATCATGGCTTTGCGTCGTTCTGGTTTTAATTTCTGCGCAAATTCACGTCTCAGCCCGATCGGATAAGGAAATTAGGGAAAGATTTTATGGAAACTTGATCAACTCAACGGCTCCGACTTCCGGTGACGGTAGCATTGCCCAAATGTTCGATAAGGTGCTCGAGAAGGAGTTCTCTGACAATGATCTGCCCGAAGGTTCTGGTGGAAGCAGCTTTAATAGCAGCGTTGCTGATCAGGAGGCAGAACTGGAGACAGTAGCTAAAATCACACATGAGAAGGGCAAGAAAAATGATAGTCAAAAGGCAAATGGGACAAGAGCATTCCAATTGCAGGATGTTTTCTCTCTGGAAAATGAAGAATCTGATGATGTTACGACGTTGATTGATAAAAAAGACAATGTATTTGTGATGTCAAACAAGAAATCAAAGTATCCAGTACTTCAAGTAGATTTGAGATTGATTTCAGACTTGGTGGTGGTTATTGTTTCTGCTGCAATTGGAGGAATTATATTTTCTTGTCTTGGGCAACCAGTTATTGTGGGCTATCTTCTTGCTGGATCAATCATTGGACCGGGAGGTCTAAAATTCATCAGTGAAATGGTGCAGGTTGAGACTGTGGCACAATTTGGTGTTGTATTTCTTCTTTTTGCTTTAGGACTGGAGTTTTCTTTGACAAAGTTAAAAGTTGTTGGAGCTGTGGCTGTTTTTGGAGGTTTTCTACAGATCATCATATTTATGTTTTTGTGTGGTATCATTGCCATGTTAAGTGGAGCTAAATTATCCGAGGGTGTATTTGTTGGTTCATTTCTATCAATGTCATCGACAGCCGTGGTGGTGAAGTTCTTAGTAGAACGGAATAGTAGTAATACTCTTCATGGTCAAGTTACTATTGGAACACTTATCTTACAGGATTGTGCCGTTGGTTTGTTATTTGCCTTGCTCCCAGTTTTGGGTGGTCACAATGGTCTTCTTTTAGGAATGATATCTATGGGAAAGTTGCTACTTGTGTTGTCTGTATATCTCACAGCCGCATCTTTTTTGTCATGGTCATTTGTTCCCCGCTTTCTTAAGTTGATGATGCAGCTGTCTTCTCAAACAAATGAGTTGTATCAGCTTGCTGCTGTGGCATTCTGCTTGCTGTCTGCTTGGTGCAGTGATAAGTTGGGCCTCAGTCTTGAGTTGGGTTCCTTTGTAGCTGGAGTTATGATATCTACCACTGACTTCGGTCAACATACTTTAGATCAGGTGGAACCAATCCGCAATTTGTTTGCAGCTTTGTTCCTTTCAAGTATTGGAATGCTCATTCATGTACATTTTCTGTGGAGCCATTTGGACATTTTGCTGGCATCTGTAATGCTGGTTGTGTTTGTTAAGACAGCCGTTGCTACTGTCGTTGCAAAGGCATTTGGATACAGTATTAGGACTTCTTTTCAGGTTGGGGTCATGCTTGCTCAAATTGGAGAGTTTGCTTTTGTTCTCCTAAGCCGTGCTTCAAATCTTCATCTCATTGGGGGGAAAGTTTATCTGCTTCTTCTTGGAACAACCGCTCTTAGTCTGGTTACCACCCCTCTTCTGTTCAAATTGATACCTGCCGTGTTGAATTTAGGGGTTCTCATGCATTGGTTCCCCTCTGAAAGCAACATTCAAAACGAGGAGAAAGCATCAATGATTGAAGCACATAATAGAATGTTGTGA 1737 41.57 MVSRFLMARRGGAIGSWLCVVLVLISAQIHVSARSDKEIRERFYGNLINSTAPTSGDGSIAQMFDKVLEKEFSDNDLPEGSGGSSFNSSVADQEAELETVAKITHEKGKKNDSQKANGTRAFQLQDVFSLENEESDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGAVAVFGGFLQIIIFMFLCGIIAMLSGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSSNTLHGQVTIGTLILQDCAVGLLFALLPVLGGHNGLLLGMISMGKLLLVLSVYLTAASFLSWSFVPRFLKLMMQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGVMISTTDFGQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWSHLDILLASVMLVVFVKTAVATVVAKAFGYSIRTSFQVGVMLAQIGEFAFVLLSRASNLHLIGGKVYLLLLGTTALSLVTTPLLFKLIPAVLNLGVLMHWFPSESNIQNEEKASMIEAHNRML 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46860039 46867694 - Lag0019942.1 Lac5g2858 609500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2858 578 Gene3D - 165 548 IPR038770 -
Lac5g2858 578 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 18 573 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
Lac5g2858 578 Pfam Sodium/hydrogen exchanger family 175 541 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2790 Lac-Chr10:42396852 Lac5g2858 Lac-Chr5:46860039 1.50E-25 dispersed
Lac12g1169 Lac-Chr12:15580301 Lac5g2858 Lac-Chr5:46860039 1.30E-08 dispersed
Lac1g0446 Lac-Chr1:9840534 Lac5g2858 Lac-Chr5:46860039 8.00E-08 dispersed
Lac3g1009 Lac-Chr3:8218168 Lac5g2858 Lac-Chr5:46860039 3.00E-182 dispersed
Lac5g2858 Lac-Chr5:46860039 Lac7g0255 Lac-Chr7:1996328 2.50E-35 dispersed
Lac5g2858 Lac-Chr5:46860039 Lac6g0195 Lac-Chr6:1516352 8.90E-187 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2858 K26735 - csv:101207607 1026.93