Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2869 ATGGGTACCACGTGTCCTCACAGCATGAAATGGAGGTCGGGTGGGGCAGGTTTTGCAGCTGCCCGTAGAATTAGAATTGCCCGAGAGCCTCTCTTTTTTCCTGCTCGACGAAGAACTGGGTCGGAAAAAGGGAAAAATAATTTAATTTTTCCCACAGAGGAAAACACACAGCGACACGTTTTCTTCTCAGCGAAATTCCGCACCGCATTCCATTACTTCCTTATATTACACTTCGCCGATGATGATTGTCCTCACAGAGAGATTCTTGTCGGCCTGTTCCTGCTTCGGACCATTCCGATGACGGACGTTTACTGTAGAATGCCAAGCGAAGATGATGGAGATTCGCCGGCCAAATGCCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGGCGATTAGCAACAGTACCGTCCGCGAATCCCTCGTCCTCGACCAGTCACCACCGGAAGGAGAATCAGACTGAGACTTCCGGTTTCGAGAAGAAGCGTGTTCGGAAGACGGACGGCGACGGTACTCCGGAGATTTCATCATCTTCGTCATCGGGGGAGGACGTGAAGACTGTAGTGGCTTCACCGTCGGTACCTCAGCCGGTGTTCGGGATGATGTCGGTGTCCGGGAGGTCACGTGAGATGGAGGACGCAGTATCGGTGAGCACGTGGCTTCTTGGTCCAGAAAATTGCCGGCGGCTACCGGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCCCTATGTAGGGAGAAGATGCACGTGTTAGTACGGGAGGAATTTTCGCGCGTGGTGGGTACGCGCCAAGAAACTGAGAGTGGCGGCGGAGGAAGCAGCACGGCGGATGAGGTTAAGGTGGAGGAGGAGGCGACTTGGAGAAGAGTGATGCGGCGGAGCTTTGAGAGAATGGATGAAGTGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGCCAGTGTGGTTGCCATCCAATGGAGGTGGCTCTCGGCGGCTCCACCGCTGTCGTCGCCGTGCTCACGCCGGATCACATAATCGTCGCCAACTGCGGTGATTCACGCGCCGTCCTCTGCCGAGGAGGAAGGGCCATTCCGCTTTCCAATGATCACAAGCCTGATAGAATTGATGAACTAGCAAGGATCGAAGCTGCTGGGGGACGGGTGATTTTTGTTAATGGAGCTCGGGTTGAAGGCATCCTTGCAATGTCCCGTGCAATAGGGCAGAAATATGAAGTAATTTCTGAACGAATGCATGATGTTGCATTTACTCATCAACAGATTCTTGGCATGATTGAATGGTCGTGTGAATAA 1308 53.75 MGTTCPHSMKWRSGGAGFAAARRIRIAREPLFFPARRRTGSEKGKNNLIFPTEENTQRHVFFSAKFRTAFHYFLILHFADDDCPHREILVGLFLLRTIPMTDVYCRMPSEDDGDSPAKCRERRRRRIEMRRLATVPSANPSSSTSHHRKENQTETSGFEKKRVRKTDGDGTPEISSSSSSGEDVKTVVASPSVPQPVFGMMSVSGRSREMEDAVSVSTWLLGPENCRRLPVHFFAVYDGHGGPHVAALCREKMHVLVREEFSRVVGTRQETESGGGGSSTADEVKVEEEATWRRVMRRSFERMDEVALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRGGRAIPLSNDHKPDRIDELARIEAAGGRVIFVNGARVEGILAMSRAIGQKYEVISERMHDVAFTHQQILGMIEWSCE 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46920239 46923443 + Lag0019953.1 Lac5g2869 609511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2869 435 MobiDBLite consensus disorder prediction 147 169 - -
Lac5g2869 435 ProSiteProfiles PPM-type phosphatase domain profile. 197 435 IPR001932 -
Lac5g2869 435 Pfam Protein phosphatase 2C 198 409 IPR001932 -
Lac5g2869 435 PANTHER PROTEIN PHOSPHATASE 152 409 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac5g2869 435 MobiDBLite consensus disorder prediction 170 186 - -
Lac5g2869 435 CDD PP2Cc 197 414 IPR001932 -
Lac5g2869 435 MobiDBLite consensus disorder prediction 266 285 - -
Lac5g2869 435 SUPERFAMILY PP2C-like 192 411 IPR036457 -
Lac5g2869 435 ProSitePatterns PPM-type phosphatase domain signature. 233 241 IPR000222 GO:0043169(InterPro)
Lac5g2869 435 MobiDBLite consensus disorder prediction 128 188 - -
Lac5g2869 435 Gene3D - 193 419 IPR036457 -
Lac5g2869 435 SMART PP2C_4 187 434 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2869 Lac-Chr5:46920239 Lac8g2934 Lac-Chr8:46361483 6.30E-44 dispersed
Lac5g2869 Lac-Chr5:46920239 Lac7g2763 Lac-Chr7:46777990 2.00E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2869 K14497 - csv:101206634 525.783