Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2878 ATGGGAAGAGGAAAAGTTGTGCTTGAGAGAATAGAGAACAAAGTGAACCGTCAAGTGACCTTCTCAAAGCGCAGAAATGGGTTATTGAAGAAGGCCTATGAGCTCTCTGTGCTCTGTGATGTTGACGTTGCCCTCATAATCTTCTCTAGTCGTGGCAAGCTCTTTGAATTTGGCAGCACCGACATGAACAAGATCCTTGAAAGGTACCACCAGCGATGTTACAGCTCTGGATCAAGCAGCCACCTTGACGAGAGTGACATACAGATAGAGGAGGTGTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCGCATAGGAACTATCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCACAGTCTTGAGAAACAGTTGGACAAAACTCTTTCACAAACAAGGCAACGGAAGGCTGAGATAATGCTTCAAAGATTAGCAGACTTGCGCAAAATGGAGCAGGACCTTGGAGATCAGAATACTCAGCTCAAGTCAAAGCTTGAAGAAGGACAACAATGTATGCAACAAAACGAAGATGGAGAAGGAGATCCAAACAAACAACTACTGAATTACGAAGTTGTGGCAGATCCAAACATGAACAGCAGGTACTTTGATGTCCAAGAAGATGAAGAAGCCAGGGCCATGATAGGAGGGAGTAACCTAATCCCAGATTGGCTCCTATGA 690 44.35 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCDVDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSSHLDESDIQIEEVSKLRAKYESLQRSHRNYLGEELEPLNLKELHSLEKQLDKTLSQTRQRKAEIMLQRLADLRKMEQDLGDQNTQLKSKLEEGQQCMQQNEDGEGDPNKQLLNYEVVADPNMNSRYFDVQEDEEARAMIGGSNLIPDWLL 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47035658 47040850 + Lag0019962.1 Lac5g2878 609520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2878 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2878 229 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lac5g2878 229 MobiDBLite consensus disorder prediction 158 188 - -
Lac5g2878 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac5g2878 229 Coils Coil 151 171 - -
Lac5g2878 229 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2878 229 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac5g2878 229 MobiDBLite consensus disorder prediction 160 185 - -
Lac5g2878 229 Coils Coil 92 112 - -
Lac5g2878 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2878 229 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac5g2878 229 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2878 229 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2878 229 Pfam K-box region 89 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac5g2878 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2878 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2878 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2878 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2008 Lac-Chr5:38525209 Lac5g2878 Lac-Chr5:47035658 2.40E-19 dispersed
Lac5g2878 Lac-Chr5:47035658 Lac6g0810 Lac-Chr6:6986829 8.80E-37 dispersed
Lac5g2878 Lac-Chr5:47035658 Lac5g2881 Lac-Chr5:47066980 8.80E-29 proximal
Lac11g2156 Lac-Chr11:37612216 Lac5g2878 Lac-Chr5:47035658 2.30E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23923 PF01486 K-box 1.10E-23 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2878 K09264 - csv:101212022 351.288