Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g2881 | ATGAAAATGGTGAGAGGAAAAGTAGAAATGAAACGAATAGAAAATGCGACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTGTTGAAGAAGGCGTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCTCAGAAAGGCCGTCTCTATGAGTTTGCAAGCTCTGAAATGCCTAGGATTGTAGAACGATATCGCAAATGTGCAAGAGAAGGGAGGAACAACAATAGCAAATTTGATAGACAACTCCAATTACAGCAATTAAGGGTTGAAGCCGAAAGCATTAATGAGAAGATCGAGTTGATTCAAGTTTCTCAACGGAAGCTGTTGGGATATGGACTGGATTCTTGTTCCCTTGATGAACTTCAATTACTCGATGCTCAGCTTCAGCAAAGTTTGTTCCAAATTAGGGCCAGAAAGGTTCAGCTATACAAGGAACAAATACAACAACTAGAAGAGAAGGCCGAAGCTCATGGTGGCGCCGCCGCTCCCGGCTGCCGGAGGAGCTCAAGTTGGGCAGTCGACACCCAGTTGTCCATTTGA | 561 | 43.85 | MKMVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPRIVERYRKCAREGRNNNSKFDRQLQLQQLRVEAESINEKIELIQVSQRKLLGYGLDSCSLDELQLLDAQLQQSLFQIRARKVQLYKEQIQQLEEKAEAHGGAAAPGCRRSSSWAVDTQLSI | 186 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 47066980 | 47074099 | - | Lag0019965.1 | Lac5g2881 | 609523 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g2881 | 186 | CDD | MADS_MEF2_like | 5 | 74 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Lac5g2881 | 186 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 12 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2881 | 186 | Gene3D | - | 16 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2881 | 186 | ProSiteProfiles | MADS-box domain profile. | 3 | 63 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2881 | 186 | Pfam | K-box region | 88 | 162 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lac5g2881 | 186 | Coils | Coil | 91 | 111 | - | - | |
| Lac5g2881 | 186 | SMART | madsneu2 | 3 | 62 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2881 | 186 | SUPERFAMILY | SRF-like | 5 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2881 | 186 | Coils | Coil | 140 | 167 | - | - | |
| Lac5g2881 | 186 | PRINTS | MADS domain signature | 5 | 25 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2881 | 186 | PRINTS | MADS domain signature | 25 | 40 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2881 | 186 | PRINTS | MADS domain signature | 40 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2881 | 186 | ProSitePatterns | MADS-box domain signature. | 5 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2881 | 186 | FunFam | MADS-box transcription factor MADS-MC | 15 | 87 | - | - | |
| Lac5g2881 | 186 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 160 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lac5g2881 | 186 | ProSiteProfiles | K-box domain profile. | 91 | 186 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g1474 | Lac-Chr11:25073635 | Lac5g2881 | Lac-Chr5:47066980 | 3.70E-26 | dispersed | |
| Lac12g1858 | Lac-Chr12:35061191 | Lac5g2881 | Lac-Chr5:47066980 | 3.80E-13 | dispersed | |
| Lac5g2881 | Lac-Chr5:47066980 | Lac7g0288 | Lac-Chr7:2240055 | 1.60E-41 | dispersed | |
| Lac5g2878 | Lac-Chr5:47035658 | Lac5g2881 | Lac-Chr5:47066980 | 8.80E-29 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23924 | PF01486 | K-box | 2.40E-17 | No_clan | Lac | TF |
Pathway information