Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2884 ATGTTTGAGACAATGGCGAGAAATGCAACAGTCTTGTTTCTAATGATGATGGTTTGTCTGTCGGAAGGAGTTCTTGACAGCAATTATTACTCAAAAACATGTCCCAATGCTCACAAAATCATCCTCCAAACTGTCTACAATGCTTCCATTCATGACCCCAAAGTCCCTGCTCGTCTTCTCAGGCTCTTCTTCCATGACTGTTTCATAAGGGGATGCGATGCGTCGGTGCTGATAGATTCAACGCCAGGGAATCAGGCAGAGAAAGATGCACCTCCGAACATCTCGTTAAGGTCATTCTATGTGATCGATGATGCTAAAGCCAAGCTTGAAAGTGCATGTCCACGTACGGTTTCTTGTGCTGATATTGTCGCCATTGCTGCTAGAGATGTAGTAACTCTGTCTGGGGGCCCATATTGGAGTGTACTGAAAGGCAGGAAAGATGGGAAGATTTCCAATGCTTCTGAAACCATCAACTTGCCAGCACCAACTTTCAATGTGTCTCAACTCATCCAAAGCTTTGCAAACAGAGGATTACAAGTTAAAGACTTGGTTGCTCTATCTGGAGCTCACACTCTTGGATTCTCACACTGTTCTTCCTTCCAATCCAGACTCCGCAACTTCAGCTCAATTCATGAAACTGATCCAACTTTGGAATCTGGGTTTGCACAGATTCTGAAAAACAAATGTCCAAAACCAAATTTGGACAAAAATTCAGGACAGTTCTTGGACCCAACTTCCTCGACTTTTGACAATGTGTACTACAAAAGACTGTTGGAAGGAAAGGGTGTGTTCGGTTCAGATCAATCTCTGTTTGGTGATTCTAGAACTAAATGGATTGTTGGGTCCTTTGCTAAAGATCAGAACTTGTTCTTTAAGGAGTTTGCAGCTTCAATGGTGAAATTGGGAAATGTTGGGGTTAGTGAAAATGGCAATGTCAGACTCAATTGCAGGGTGGTGAACTGA 963 42.99 MFETMARNATVLFLMMMVCLSEGVLDSNYYSKTCPNAHKIILQTVYNASIHDPKVPARLLRLFFHDCFIRGCDASVLIDSTPGNQAEKDAPPNISLRSFYVIDDAKAKLESACPRTVSCADIVAIAARDVVTLSGGPYWSVLKGRKDGKISNASETINLPAPTFNVSQLIQSFANRGLQVKDLVALSGAHTLGFSHCSSFQSRLRNFSSIHETDPTLESGFAQILKNKCPKPNLDKNSGQFLDPTSSTFDNVYYKRLLEGKGVFGSDQSLFGDSRTKWIVGSFAKDQNLFFKEFAASMVKLGNVGVSENGNVRLNCRVVN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47092470 47093994 - Lag0019968.1 Lac5g2884 609526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2884 320 Pfam Peroxidase 44 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 SUPERFAMILY Heme-dependent peroxidases 25 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 ProSiteProfiles Plant heme peroxidase family profile. 24 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 Gene3D Peroxidase, domain 2 160 301 - -
Lac5g2884 320 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PANTHER PEROXIDASE 25-RELATED 18 316 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lac5g2884 320 Gene3D - 28 320 - -
Lac5g2884 320 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2884 320 CDD secretory_peroxidase 25 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac5g2884 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lac5g2884 320 FunFam Peroxidase 28 168 - -
Lac5g2884 320 FunFam Peroxidase 160 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g0109 Lac-Chr1:1998962 Lac5g2884 Lac-Chr5:47092470 2.70E-66 dispersed
Lac1g3035 Lac-Chr1:51014104 Lac5g2884 Lac-Chr5:47092470 7.10E-93 dispersed
Lac4g2573 Lac-Chr4:44896853 Lac5g2884 Lac-Chr5:47092470 2.40E-67 dispersed
Lac5g2884 Lac-Chr5:47092470 Lac8g2980 Lac-Chr8:46678010 2.60E-71 dispersed
Lac5g2884 Lac-Chr5:47092470 Lac6g0525 Lac-Chr6:4368056 5.60E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2884 K00430 - csv:101210306 563.918