Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2894 ATGGATATCTTTCCAAGTTTTTATGAAGAGTTGTCGAGCTCTGAGAGTAGTAATTGCCGGCGGGCCATTTTTTCCGACGAGGAGGTTATGTTAGCGGCGTGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAAACAAGGCATCCGGTTTACAGAGGAGTCAGGCGGAGGAACTCCGGCAAGTGGGTCTGTGAAGTTAGAGAGCCCAATAAGAAGTCTAGAATTTGGCTTGGGACCTTTCCGACGGCGGAGATGGCGGCTCGTGCCCACGACGTGGCGGCGATGGCGCTCAGAGGTCGCTCTGCTTGTCTCAATTTCGCCGATTCTGCTTGGCGGCTGCCGGTGCCGGCCTCCGCTGACGCCAGAGATATTCAGAAGGCGGCGGCGGCAGCGGCAGAGGCATTCCGGCAGGTTGAGTCAGATGGGTCTTCCGTCGATGATTCAAGGGCGGAAAATGGGATGACGGTGGAGACGGCGGCGACGGAGCCGGAAAGCGTGTTTTACATGGATGAAGAGGCAGTTTTTGGGCTGCCGGGACTGTTGGAAGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTATTAA 642 54.67 MDIFPSFYEELSSSESSNCRRAIFSDEEVMLAACNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMALRGRSACLNFADSAWRLPVPASADARDIQKAAAAAAEAFRQVESDGSSVDDSRAENGMTVETAATEPESVFYMDEEAVFGLPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47137112 47137753 - Lag0019978.1 Lac5g2894 609536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2894 213 SMART rav1_2 52 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2894 213 CDD AP2 53 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2894 213 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2894 213 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677(InterPro)
Lac5g2894 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 213 IPR045277 GO:0003700(InterPro)
Lac5g2894 213 Pfam AP2 domain 51 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2894 213 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Lac5g2894 213 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2894 213 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2894 213 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1296 Lac-Chr11:19597654 Lac5g2894 Lac-Chr5:47137112 3.90E-65 dispersed
Lac11g2139 Lac-Chr11:37442562 Lac5g2894 Lac-Chr5:47137112 2.70E-54 dispersed
Lac5g2894 Lac-Chr5:47137112 Lac6g1089 Lac-Chr6:10126801 7.70E-27 dispersed
Lac5g2894 Lac-Chr5:47137112 Lac5g2895 Lac-Chr5:47149366 1.20E-27 tandem
Lac11g2138 Lac-Chr11:37419033 Lac5g2894 Lac-Chr5:47137112 2.80E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23926 PF00847 AP2 1.10E-15 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2894 - - - 0.0