Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2895 ATGGGTGGCCTCCATTCTCCCCCCGCCCGCCCCGCCCGCCACCCCAACTTCCGCGGAATCCGCACCCGTAGCGGCAAATGGGTCTCTGAGATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACCTACCCCACCCCCGAGATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCGCTCTCAAAGGCCCCGATGCCTCCCTTAATTTCCCCGACTCTCTCTCTTCCTATCACATTCCCTCTTCCACTTCCGCTTCGGATATTCGCGCCGCCGCAGCCCTCGCTGCCGCTTCCAGACTCCCCATTAACCCCGACGCCGCTGCTGCTACTGCTGCTGTTGATGCAGACACCCATCAGCTAGATGAGGCTGGCCCGTCTTCCGACGCCGCCGCGGCTTCTGCCGGAGAGTTTTTGGACGAGGAGGAGTTACTCAACATGCCGAACTTACTAGTGGACATGGCCGAGGGAATGCTCGTCAGTCCGCCGAGGATGAAGTCGCCGTCTTCCGATGACTCTCCGACCAACTCTCAGGGGGATGGATTATGGAGTTACTCCTAA 561 61.68 MGGLHSPPARPARHPNFRGIRTRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLNFPDSLSSYHIPSSTSASDIRAAAALAAASRLPINPDAAAATAAVDADTHQLDEAGPSSDAAAASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTNSQGDGLWSYS 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47149366 47149926 - Lag0019979.1 Lac5g2895 609537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2895 186 ProSiteProfiles AP2/ERF domain profile. 16 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2895 186 MobiDBLite consensus disorder prediction 1 21 - -
Lac5g2895 186 MobiDBLite consensus disorder prediction 166 186 - -
Lac5g2895 186 CDD AP2 15 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2895 186 SMART rav1_2 16 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2895 186 SUPERFAMILY DNA-binding domain 17 74 IPR016177 GO:0003677(InterPro)
Lac5g2895 186 Gene3D AP2/ERF domain 16 73 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2895 186 PRINTS Ethylene responsive element binding protein signature 54 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2895 186 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2895 186 MobiDBLite consensus disorder prediction 158 186 - -
Lac5g2895 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 185 IPR045277 GO:0003700(InterPro)
Lac5g2895 186 FunFam Ethylene-responsive transcription factor 2 16 73 - -
Lac5g2895 186 Pfam AP2 domain 15 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2138 Lac-Chr11:37419033 Lac5g2895 Lac-Chr5:47149366 2.00E-43 dispersed
Lac1g2243 Lac-Chr1:43829649 Lac5g2895 Lac-Chr5:47149366 1.90E-29 dispersed
Lac5g0687 Lac-Chr5:8529544 Lac5g2895 Lac-Chr5:47149366 3.10E-47 dispersed
Lac5g2895 Lac-Chr5:47149366 Lac6g3016 Lac-Chr6:47767594 1.20E-23 dispersed
Lac5g2894 Lac-Chr5:47137112 Lac5g2895 Lac-Chr5:47149366 1.20E-27 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23927 PF00847 AP2 6.80E-11 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2895 - - - 0.0