Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2912 ATGCCTAGTGGTGCAATTGCTGACCAGAGCTTTCTGGCTTACCCAATTCCCAGTTCAATGCCTAGCTCCTCTGAATTCTCCAGTTCCATACGGAAAATGGATGGTTATGGCGAAGTGTGTCTGCTTGGAGACAGCTTTGATCAGAGTGGAGTTGTGAGGACTAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAACATCGATGGTGCTGTATCTGGGGATGATCAAGATGCTAATGACGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCTCATCAGATCCAAGAGCTTGAGATTTTCTTCAAGGAATGTCCTCATCCTGATGATAAACAAAGGAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGACAAAGCAAGTGAAATTTTGGTTTCAAAATCGGCGAACACAGATGAAGACACAAATAGAACGCCATGAGAATGCAATTCTTAAGCAAGAAAACGATAAGCTCCGGGCCGAGAATAGTGTGATGAAGGATGCTATTTCTAACCCAACGTGCAATACGTGTGGTGGCCCTTCAATTCCTGTTCATCTATCATTCGAAGAACACCAGCTTAGGATTGAAAATGCCAGATTAAGGGATGAACTGCACCGGTTGTATAGTGTCACCAACAAGTTCTTGGGCTGGCCACCCTTTGTCAATCATGGCTCTTCACCGAGTTCTGACTCGTGCTTTGAACTTTCTGTAGGAAGAAATGGAATCGGAAGTTTGAGTACCATTTCTGATCCTATTCCAATGGGGCTTAACTTGGGAAACGGACCTTTCGGTGCTGGCCCTGTGATGCCTACTGGTAAGCCTGAAATAGGCATGCCAGGCAATGATATACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCTATGAATGAATTGGTTAAGATGGCTCAAATGGATGGTCCCCTTTGGATCAGAAGTCAGGATGGCAGTGGCAAAGAGACATTGAACCTTGACGAATATTCAAGAACATTTCCTTCTTCAGCTGGCATGAAGCACAGTAATTGGACAACAGAGGCGACCAGAGACACTACTATGGTCATCATCAACAGCTTGGCACTTGTTGAGACGTTGATGGATGCAAACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTAGAGCTACTACAATCGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAACTGATGCATGCTGAACTTCGAGTACTTTCCCCACTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCTGCATGCTGATGGTCTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCAAATTCAAACTCGTTTTTTGGTTGCAGGAGGCTCCCTTCGGGCTGTGTCGTACAAGATATGCCTAATGGTTTTTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACTGTTATGCACCAACTTTACCGCCAAGCAATTCGTTCGGGCATCGGCTTCGGTTCACAACGGTGGCTTGCTACCCTTCAAAGACAATGTGACTGTCTGGCGATTCTAATGTCTTCTACTATCCCCACTGAAGATCCTACAGGAATGTCGCCATGTGGTAAGAGAAGTTTGTTGAAACTCTCCCAACGGATGGTCGATAACTTTTGTTCTGGGGTTTGTACTTCAACTTTGCATAAGTGGGACAAGCTTGTTGTTGGCAATATTAGTGAGGATGTAAAAGTGATGGCTAGAAAGAGCATCAACGATCCTGGCGAGCCACCGGGTATTGTGTTGAGTGCTGCAACTTCTGTTTGGATGCCAGTAACTCAACAGAGGTTGTTTGCATTCTTGCAAGACGAGTGCTTACGAAGTGAGTGGGACATTTTATCCAATGGCAGGCCAATGCTAGAGATGCTTCACATCTCGAAAGGCCAGGGACCGGATAACCGTGTTTCTCTCCTGCGTGCTAATCCCATGAATGCTAATGAGAGCACCATGCTCATATTGCAAGAGACTTGGACTGATATATCAGGCTCACTGGTTGTTTACGCTCCAGTCGATACAGCCTCGGTTAATTTGGTGATGCGTGGAGGAGATTCTGCTTATGTATCACTACTCCCATCAGGATTCGCGATTCTCCCCGATGGCCCATCCAGCTATGCTTGTACAAACAACGACAAAGACGCTTCGATCAAGTCAGACATCAACAATAGCCATGGTGCTGGATGCCTGCTCACAGTCGCATTCCAAATTTTGGTGAATAGCCTTCCAACAGCCAAACTCACCGTGGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAACCGCCCTTCAAGTATCGTGA 2355 45.65 MPSGAIADQSFLAYPIPSSMPSSSEFSSSIRKMDGYGEVCLLGDSFDQSGVVRTREDEYDSRSGSDNIDGAVSGDDQDANDEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIENARLRDELHRLYSVTNKFLGWPPFVNHGSSPSSDSCFELSVGRNGIGSLSTISDPIPMGLNLGNGPFGAGPVMPTGKPEIGMPGNDIPLERTIYVDLALAAMNELVKMAQMDGPLWIRSQDGSGKETLNLDEYSRTFPSSAGMKHSNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKLHADGLWAVVDVSIGEGSNSNSFFGCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVMHQLYRQAIRSGIGFGSQRWLATLQRQCDCLAILMSSTIPTEDPTGMSPCGKRSLLKLSQRMVDNFCSGVCTSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNGRPMLEMLHISKGQGPDNRVSLLRANPMNANESTMLILQETWTDISGSLVVYAPVDTASVNLVMRGGDSAYVSLLPSGFAILPDGPSSYACTNNDKDASIKSDINNSHGAGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALQVS 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47267150 47271715 + Lag0019996.1 Lac5g2912 609554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2912 784 ProSiteProfiles START domain profile. 285 519 IPR002913 GO:0008289(InterPro)
Lac5g2912 784 Pfam START domain 295 515 IPR002913 GO:0008289(InterPro)
Lac5g2912 784 SUPERFAMILY Bet v1-like 545 778 - -
Lac5g2912 784 Coils Coil 138 170 - -
Lac5g2912 784 MobiDBLite consensus disorder prediction 15 29 - -
Lac5g2912 784 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac5g2912 784 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677(InterPro)
Lac5g2912 784 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 74 782 IPR042160 -
Lac5g2912 784 MobiDBLite consensus disorder prediction 1 29 - -
Lac5g2912 784 SUPERFAMILY Bet v1-like 286 516 - -
Lac5g2912 784 SMART HOX_1 86 148 IPR001356 GO:0003677(InterPro)
Lac5g2912 784 FunFam Homeobox-leucine zipper protein GLABRA 2 294 515 - -
Lac5g2912 784 CDD START_ArGLABRA2_like 294 514 - -
Lac5g2912 784 Gene3D - 73 160 - -
Lac5g2912 784 Pfam Homeodomain 87 142 IPR001356 GO:0003677(InterPro)
Lac5g2912 784 CDD homeodomain 87 144 IPR001356 GO:0003677(InterPro)
Lac5g2912 784 FunFam Homeobox-leucine zipper protein HDG1 73 160 - -
Lac5g2912 784 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
Lac5g2912 784 SMART START_1 294 516 IPR002913 GO:0008289(InterPro)
Lac5g2912 784 MobiDBLite consensus disorder prediction 51 94 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1799 Lac-Chr12:34276663 Lac5g2912 Lac-Chr5:47267150 5.70E-267 dispersed
Lac5g2912 Lac-Chr5:47267150 Lac9g2062 Lac-Chr9:40201422 5.60E-192 dispersed
Lac11g2580 Lac-Chr11:41843654 Lac5g2912 Lac-Chr5:47267150 4.20E-14 transposed
Lac5g2912 Lac-Chr5:47267150 Lac7g0267 Lac-Chr7:2084203 5.60E-216 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23930 PF01852 START 3.60E-46 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2912 K09338 - csv:101218216 1405.96