Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2947 ATGCCTTCATGGTGGGGGAAGCCATCATCCAAAGAAGTAAAGAAGAAAACGAGCAAGGAAAGTTTCATTGACTCATTACACCGTAAGTTTAAGAATTCACCTGAAGGGAAAGTAAGCGGTAGATCAGGAAGTTCTCGTAGACGGGGTGGTGACACTATATCTGAGAAGGGGTCTAAATCACCTCTATCAAGATCACCATCACCTTCCAAAGAAGTATCTAGATGTCAAAGTTTTGCTGAAAGATCACGTTCTCACCAACTTCCACTTCCAGAACTGCACCCTGTAGGTGTAGGTCGTACAGATTCTGGGATTAGTGTGACAGCAAAATCAAAATTAGAGAGAAGCTCCAAGACACCTTCATTCTTACCCCTCCCTAGACCTGCATGTATTCGAAGTAGGCCAGATCCTGCAGATTTGGATGGAGACTTGGTCACTGGTTCAGTCTCTGGTGAGTCCTCAAGTGATAGTGACGATCCCAATGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGACATTGGAACTAGAACTGTGATAGGTTCTACTGAACCTAGTGCAACTCTCAAAGATCAGTCTTCTACTGTCGTGCAAATGAATTTAAAAGAGGGCAAGAAATTGGAAAGTCTTTCATTTCCTCATAAGAATGCTTCATTACCTAAACGGAGGCCTTTGAGCAGCAATGTAACAAATCTACAAGTTCCTCGCCATGGGGCTTTCTTTAGCGCTCCAGATAGTTCCATGTCTAGTCCCTCTAGAAGTCCTATGAGGGTATTTAGCACTGAGCAAGTCATGAACACTGCTGTTTGGGCTGGAAAGTCTCACCCTGATGTCATTTTAGGTGGATCTGGCCACTGCTCCAGTCCTGGTTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCGGGCCACTTCTTTTGGCAACAAAGTAGGGGTAGCCCCGAATATTCTCCAGTACCTAGTTCTCGAATGACTAGCCCCGGCCCAAGCTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCTAGAGCAGGAGCTCCACCTGCTGAGTCACAAACATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCTTCTCCATTTTCTCATTCAAATTCAGCAGTGACATCTCCTTCGGTTCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGTGAAAGTGGAGAAATGTGTGCAATGAAGGAGGTCACATTATTTTCTGATGATGCGAAGTCCAAGGAAAGTGCAAAACAATTAATGCAGGAAATTGCTTTATTGAGTCGTTTACGGCATCCCAACATCGTGCAGTATTATGGTTCGGAAACAGTGGGTGATAAGCTCTATATATATCTGGAATATGTATCTGGTGGCTCCATTTATAAATTACTACAAGAGTATGGACAATTTGGGGAACTAGCAATTCGTAGCTATACTCAACAAATACTATCAGGACTTGCATATTTGCATGCTAAAACTACAGTGCACAGGGATATCAAAGGAGCAAACATACTTGTTGACCCAAATGGTCGTGTTAAATTAGCAGACTTTGGGATGGCGAAGCATATCACTGGTCAATCATGTCCCCTGTCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATTAAGAACTCAAATGGTTGCAACCTTGCCGTTGATATTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAACCACCTTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGTAATAGCAAAGAACTCCCAGTAATTCCAGAACACCTCTCAGACGATGGGAAGGATTTTGTGAGACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTTTTGGATCATCCTTTTGTCAAATATGCTGCACCTGTAGAGAGGCCTTTTTTGAGCTCTGAACCTTCTGATGCAACTCCTGGGGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTTTGGACTCAGATAGTAGACTTGCAATTCATTCTTCAAGAGTCTCAAAAGCTGTTCTTCATGCCAGTGAAATCAGTATTCCCAGAAACATATCATGTCCTGTTTCACCAATTGGAAGTCCTCTTTTGCACTCGCGATCGCCTCAACATCCCAGTGGAAGAATGTCGCCTTCACCTATATCAAGTCCACGAACCACTTCGGGTTCGTCGACCCCTTTGACAGGATGTGGTGGTGCAATCCCTTACAACCACCTGAAACAAGCTATATACTTGCAAGAGGGATTTGGAAGCATGCCAAAGTCCTTAAATAACAGTCCGTACAGCAGTGGTCTCTCCTTCCATGATTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGACTCCCATCTTCTCTGAAATGATACCAGAAAATGATATCTTGGGAAAGCAGGTCGGAAGGCCTGCTTATGGTGAATTGTATGATGGACAGCAGGTCTTGGCTGATCGAGTGTCTCGACAGCTCCTGAGGGATCATGTTAAAACACACCCTTCTCTTGATTTGAGTCCTAGCCCTACATTGTCTGGCCGCATGAATGGTATCTGA 2694 44.99 MPSWWGKPSSKEVKKKTSKESFIDSLHRKFKNSPEGKVSGRSGSSRRRGGDTISEKGSKSPLSRSPSPSKEVSRCQSFAERSRSHQLPLPELHPVGVGRTDSGISVTAKSKLERSSKTPSFLPLPRPACIRSRPDPADLDGDLVTGSVSGESSSDSDDPNDSRQRSPQATDYDIGTRTVIGSTEPSATLKDQSSTVVQMNLKEGKKLESLSFPHKNASLPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFSTEQVMNTAVWAGKSHPDVILGGSGHCSSPGSGHNSGHNSMGGDMAGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQTCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKTTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPEHLSDDGKDFVRLCLQRNPHHRPTAAQLLDHPFVKYAAPVERPFLSSEPSDATPGVTNGVKILGIGQSRTTSLDSDSRLAIHSSRVSKAVLHASEISIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTGCGGAIPYNHLKQAIYLQEGFGSMPKSLNNSPYSSGLSFHDSNPDIFRGLQPGTPIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRQLLRDHVKTHPSLDLSPSPTLSGRMNGI 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47502179 47507661 - Lag0020031.1 Lac5g2947 609589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2947 897 MobiDBLite consensus disorder prediction 371 403 - -
Lac5g2947 897 MobiDBLite consensus disorder prediction 313 340 - -
Lac5g2947 897 MobiDBLite consensus disorder prediction 286 412 - -
Lac5g2947 897 MobiDBLite consensus disorder prediction 165 193 - -
Lac5g2947 897 MobiDBLite consensus disorder prediction 878 897 - -
Lac5g2947 897 MobiDBLite consensus disorder prediction 103 117 - -
Lac5g2947 897 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524(InterPro)
Lac5g2947 897 FunFam Mitogen-activated protein kinase kinase kinase 408 691 - -
Lac5g2947 897 MobiDBLite consensus disorder prediction 56 83 - -
Lac5g2947 897 MobiDBLite consensus disorder prediction 882 897 - -
Lac5g2947 897 SUPERFAMILY Protein kinase-like (PK-like) 408 748 IPR011009 -
Lac5g2947 897 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 53 669 IPR050538 -
Lac5g2947 897 MobiDBLite consensus disorder prediction 745 778 - -
Lac5g2947 897 MobiDBLite consensus disorder prediction 741 778 - -
Lac5g2947 897 CDD STKc_MEKK1_plant 409 666 - -
Lac5g2947 897 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2947 897 SMART serkin_6 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2947 897 Gene3D Transferase(Phosphotransferase) domain 1 408 684 - -
Lac5g2947 897 MobiDBLite consensus disorder prediction 1 193 - -
Lac5g2947 897 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2947 897 MobiDBLite consensus disorder prediction 9 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2377 Lac-Chr1:45087148 Lac5g2947 Lac-Chr5:47502179 1.20E-118 dispersed
Lac5g2947 Lac-Chr5:47502179 Lac6g0356 Lac-Chr6:2949106 3.10E-93 dispersed
Lac5g0129 Lac-Chr5:1050954 Lac5g2947 Lac-Chr5:47502179 1.60E-29 transposed
Lac6g2641 Lac-Chr6:44160082 Lac5g2947 Lac-Chr5:47502179 1.70E-72 transposed
Lac7g0640 Lac-Chr7:5140768 Lac5g2947 Lac-Chr5:47502179 1.50E-31 transposed
Lac8g2588 Lac-Chr8:43528216 Lac5g2947 Lac-Chr5:47502179 7.40E-36 transposed
Lac11g0043 Lac-Chr11:370305 Lac5g2947 Lac-Chr5:47502179 0.00E+00 wgd
Lac5g2947 Lac-Chr5:47502179 Lac8g2723 Lac-Chr8:44674473 3.00E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86232 PF00069 Pkinase 4.70E-71 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2947 K20717 - csv:101214961 1563.51