Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2999 ATGATGAAGAATAGCTTCATCTTCCTTGAAATTTTGTTGTTTTTAGCGATCATCTTACCAGGGGCTCTCACTGAGCCAGTTGAAGACAAGCAAGCTCTGCTTGATTTCTTCCATAATATCCCCCATTCGCCCTCTCTCAATTGGAATGAGAGTAGTTCAGTGTGCAAAGCCTGGACAGGAGTGTTTTGCAACTCTGATGAGTCTAGAGTTGTAGCCCTTCGATTACCCGGCACTGGTCTGCGCGGTTCGATCCCCATGAATACTCTTAGTCGCTTATCTGCGCTCGAGATCCTAAGCCTTAGGTTGAATAGGATATCAGGACCTTTCCCTTCTGATTTTTCCAAGCTAGAAAACTTGAGTTCCTTGTATCTGCAAAACAACAAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCGGTTTGGAATAACCTTAGTATCATCGATCTATCGAACAATTTCTTTAATGGGAGTATTCCTTCTTCTATCTCAAAGTTGAGTCATTTGACTGTTCTGAATCTTGCAAACAATTCGTTTTCAGGCGAAATTCCGGACCTTAATATTCCAAGTCTGCAACGGTTAGATTTGTCCAATAATAGTCTTACAGGAAATGTGCCTCATTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCTGGTAACAATGTTACCGTAGAACATGGTGCGATTCCCCCATCGTTTCCGCTTCAGCCTCCCAGTGCTCAACCGACAGGAAAAGGAAAAGGACTAAGTGAATCTGCAACACTGGGTTTTATAATAAGTGGTTCTGTTGTAGGGTTTATTTTGCTAGCTGGTTTGTTGATTGCTTGCTGGTTGAACAAAGGAAAAGAAAATGTGAGTTCCACCATGGAGCCCAAAAAGAAGGAAGCATCTGTGAAGAAAAGGGGTTTTGAGAGCCAAGAACAAAAGAACAACCTTAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCCTCCGCTGAAGTTCTCGGGAAAGGAACCTTCGGAGTGAGCTACAAGGCGGCTTTGGAGGATTCGACGACTGTGGTGGTGAAGAGGCTGAATCAAGTGACTGTTGGAAAGCGAGAATTTGAACAGCAGATGCAGTTGATTGGAAACATTAAGCACGAGAATGTTGTTTCCTTGAGAGCATACTATTATTCAAAGGATGAAAAGCTTATGGTCTATGACTACTATGGACAAGGGAGTGTGTCTGCAATGTTACACAGTAAGGAAGGAGATGGTTTACCTGTATTAGATTGGGATACTCGGATGAAAATTGCTATCGGAGCTGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGTAAAATGTTCCCATGGAAACGTCAGAGCCTCAAACATTTTCCTCAACTCTAAAGGATATGGATGTGTATCCGATGTTGGTTTGGCCGTGTTGATGAATTCAATTCCACTACCAGCCACCAGAACTCCTGGTTACCGTGCCCCTGAAGTGACCGACACTCGGAGAGCATCAGAAGCAGCCGATGTCTACAGTTTCGGGGTGGTGTTGTTGGAGCTTCTGACTGGAAAATCCCCCATACATGTTGAAGGTTGTAATGAAGTTGTGAATCTGGTGAGGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTTTTTGATGTGCAGCTTCTCAGGTATCCAGATATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGTTTGTCTTGTGTTGCCAAAATGCCCGAGCAGAGGCCAAAAATGATCGATATAGCTTCGAGAATCGAGCAAGTTCGGCAACTGAGTACAGGAACCCGACCATCGTTTGGGTCAAAATCAGCGCATTCGACTCCAGTTCATGTAATGGAAATTGGTTCTTCCTCATATCCACATTGA 1896 43.57 MMKNSFIFLEILLFLAIILPGALTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKAWTGVFCNSDESRVVALRLPGTGLRGSIPMNTLSRLSALEILSLRLNRISGPFPSDFSKLENLSSLYLQNNKFSGPLPLDFSVWNNLSIIDLSNNFFNGSIPSSISKLSHLTVLNLANNSFSGEIPDLNIPSLQRLDLSNNSLTGNVPHSLQRFPSWVFSGNNVTVEHGAIPPSFPLQPPSAQPTGKGKGLSESATLGFIISGSVVGFILLAGLLIACWLNKGKENVSSTMEPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSTTVVVKRLNQVTVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYGQGSVSAMLHSKEGDGLPVLDWDTRMKIAIGAARGLAHIHTENGVKCSHGNVRASNIFLNSKGYGCVSDVGLAVLMNSIPLPATRTPGYRAPEVTDTRRASEAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVRWVNSVVREEWTAEVFDVQLLRYPDIEEEMVEMLQIGLSCVAKMPEQRPKMIDIASRIEQVRQLSTGTRPSFGSKSAHSTPVHVMEIGSSSYPH 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47933678 47936031 + Lag0020083.1 Lac5g2999 609641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2999 631 FunFam Probable inactive receptor kinase RLK902 26 185 - -
Lac5g2999 631 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
Lac5g2999 631 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
Lac5g2999 631 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Lac5g2999 631 Gene3D Ribonuclease Inhibitor 28 138 IPR032675 -
Lac5g2999 631 Pfam Leucine rich repeat 83 129 IPR001611 GO:0005515(InterPro)
Lac5g2999 631 Gene3D Phosphorylase Kinase; domain 1 291 401 - -
Lac5g2999 631 Pfam Protein tyrosine and serine/threonine kinase 331 594 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2999 631 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Lac5g2999 631 Gene3D Ribonuclease Inhibitor 139 226 IPR032675 -
Lac5g2999 631 SUPERFAMILY L domain-like 38 212 - -
Lac5g2999 631 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 402 608 - -
Lac5g2999 631 ProSiteProfiles Protein kinase domain profile. 327 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2999 631 PANTHER OS05G0588300 PROTEIN 9 612 IPR050994 -
Lac5g2999 631 Gene3D Transferase(Phosphotransferase) domain 1 403 609 - -
Lac5g2999 631 FunFam pollen receptor-like kinase 1 296 401 - -
Lac5g2999 631 SUPERFAMILY Protein kinase-like (PK-like) 331 595 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2999 Lac-Chr5:47933678 Lac9g2320 Lac-Chr9:42535624 1.90E-121 dispersed
Lac11g2027 Lac-Chr11:35855030 Lac5g2999 Lac-Chr5:47933678 9.10E-169 transposed
Lac11g0124 Lac-Chr11:1135943 Lac5g2999 Lac-Chr5:47933678 1.00E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86236 PF07714 PK_Tyr_Ser-Thr 5.50E-33 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2999 - - - 0.0