Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g3013 ATGAATCTTCTTGCTAACGTGGGTGTAAATCGACCGGTTAAGTTGAGGGGGGAAGACGTGGCCTGCAAGACAGTAAACCTGCACACCGGTGTGGTGCTCGCCACACCGGCTCCGATGCTTAAGTCAGCCAGCAGAACGGTAGGGCGTGGAAAAGTCAAACCAGGCGAAACCGGGGCATCGCAGAGGCGGTGGGGACCAGACGAGACCGAACGGGCTCGGCCTCGGCCCATGGCCGAGGCCGAGCAGGGGGTCGGGCCTAAAACCCGACCCCTTCGGTCTTGGCTCGTCTCACTTGCCGGTTTTGCCCCCTTGGTCCATCTTTCAGCCCAATTCCTCCCCGGTTGCCCTCGTCAGCTCCTTGTATATCGGGGTGGTCCAAAATTGCCTATAACAGACACAAAGTTTCAACCTTTGTGTGTTTCTTTACCTCAAGAGACAAAGATGGTTGATAGTTTAGCTGAATTTTTCCAACAAAATGAAGAATTTGTCGACAATCCAAGTCCCCATTTCGAAGGGGATGACCTCTTCAGCATCTTCGAGAGTTTGGAGAGTGTCGCGGAGTTCACCATGATCGAGGACGACGTCGAGCCTGCCAAAGATGGCGAGGACACCACGAGCTTGGTCTTCTCTGAGACCGAGCTCGAGACCTCGCCAAAAAGCAAAAGATTGAAGACGACTACGACGGCGGGACTTTCTTCCTATGAGGAACCAAACCCTGATGGACCTCAAAGAATGTCTCACATTACGGTGGAGCGCAACCGTAGGAAGCAAATGAACGAGCACTTGTCCGTCTTGAGGTCCCTCATGCCTTGCTTCTATGTCAAGAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAAGAGTTGCAACAAGTTCTTCAATCACTAGAGGCCAAAAAGCAAAGGAAAGTTTATAGTGAAGTGTTGAGCCCTAGGGTAGTTTCAAGTCCAAGGCCTTTACCAATGAGTCCAAGAAAGCCACCACTAAGCCCTCGCCTTAACTTGCCAATTAGTCCAAGAACCCCACAACCCTCTAGCCCTTACAGCAAGCCTCCAAGGTTGCAACAACCTCCCACCGCGATGGCGGCCGCCGCCGTCGCCGTTGCCGGTGCCTATAACATCTCTTCAAGCAGCAGCTGCACCAACAACAACAACAACTCATTAGAGCCATCGCCTTGTAATTCATCTTCAACCACAACTTCCTCCATTGACAACAATAATAACAATGCTAACAATGATCTTGTGGCGAATTCAAAATCAGCCATAGCTGAAGTTGAAGTGAAGTTTACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCACCAATTCCTGGACAAGCTGTGAAGATCATTTCTGCACTTGAACAACTCTCCCTTGAAATTCTCCATGTCAAGATCACCACTGTTGATGAAACCATGTTTAACTCTTTTACAATTAAGATTGGAATTGAATGCCAACTGAGTGCAGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA 1518 49.34 MNLLANVGVNRPVKLRGEDVACKTVNLHTGVVLATPAPMLKSASRTVGRGKVKPGETGASQRRWGPDETERARPRPMAEAEQGVGPKTRPLRSWLVSLAGFAPLVHLSAQFLPGCPRQLLVYRGGPKLPITDTKFQPLCVSLPQETKMVDSLAEFFQQNEEFVDNPSPHFEGDDLFSIFESLESVAEFTMIEDDVEPAKDGEDTTSLVFSETELETSPKSKRLKTTTTAGLSSYEEPNPDGPQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVYSEVLSPRVVSSPRPLPMSPRKPPLSPRLNLPISPRTPQPSSPYSKPPRLQQPPTAMAAAAVAVAGAYNISSSSSCTNNNNNSLEPSPCNSSSTTTSSIDNNNNNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQAVKIISALEQLSLEILHVKITTVDETMFNSFTIKIGIECQLSAEELAHQIQQTFC 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48048050 48052569 + Lag0020097.1 Lac5g3013 609655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g3013 505 SMART finulus 248 299 IPR011598 GO:0046983(InterPro)
Lac5g3013 505 CDD bHLH_AtFAMA_like 245 318 - -
Lac5g3013 505 MobiDBLite consensus disorder prediction 382 416 - -
Lac5g3013 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 293 IPR011598 GO:0046983(InterPro)
Lac5g3013 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 315 IPR036638 GO:0046983(InterPro)
Lac5g3013 505 MobiDBLite consensus disorder prediction 63 77 - -
Lac5g3013 505 Coils Coil 286 306 - -
Lac5g3013 505 Gene3D - 236 307 IPR036638 GO:0046983(InterPro)
Lac5g3013 505 Pfam Helix-loop-helix DNA-binding domain 243 294 IPR011598 GO:0046983(InterPro)
Lac5g3013 505 FunFam Transcription factor SPEECHLESS 234 308 - -
Lac5g3013 505 PANTHER TRANSCRIPTION FACTOR FAMA 158 504 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Lac5g3013 505 MobiDBLite consensus disorder prediction 211 245 - -
Lac5g3013 505 MobiDBLite consensus disorder prediction 308 364 - -
Lac5g3013 505 MobiDBLite consensus disorder prediction 321 358 - -
Lac5g3013 505 MobiDBLite consensus disorder prediction 45 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g3013 Lac-Chr5:48048050 Lac9g2365 Lac-Chr9:42855222 4.30E-44 dispersed
Lac5g3013 Lac-Chr5:48048050 Lac4g2239 Lac-Chr4:42104319 4.60E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23936 PF00010 HLH 7.40E-12 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g3013 K20558 - csv:101211617 495.738