Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g3019 ATGCTTCGAAAAGCTAACACTTTCTCTCTCCTTGCCTATCTCTCTCTCTCTCTCTCTCTTCTTTATCCCCCTTTTCTTTCCTGTGGCACCCTATTCCGCCTTGATTCTTCCAGTTTCTACCCTGAATGGGATCATCGTTTTGATGCCCGCCCATTTACTTTTCCCCTCATCCCTCTTGATCCAACCTCGAATGTTTCCGATTTTCCCATTATTCTTCCCATGGTATGCAGCTACAATATAAGGAATGTGATTGCTCAGGCTGGACATGTAGGAATAATCAGCAGAAGGGTTCAAATCATCAATATCTGGAGGAGTTTGCCTTCCAATTTTGGATTTGTTCACACTTGGAAGCGTGAGTATAGAACGAGTCTCATGATGATGGTCGATACGGGTGCATCGGAAAATCGCGGTCCGGTTGTTGATAAGCATCCTGAGAAAGATGAAGATGGTGGCTATGCCAGTGGAGGGTGGAAAAGTGACGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGGAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTTAATGGTCAAACGGTCTGCCTGTTTGGCATCTTTGATGGTCACGGTGGATCCCGTGCTGCAGAGTTTCTGAAGAATCATCTCTTTGAAAATCTCATGAAGCACCCAAAATTTTTGATGGATACCAAATTAGCTATCAGTGAAACGTATCAACAGACTGATGCTGAATTTTTAAATTCAGAAAAAGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCGCGCACTATAATCTCAAAGGCGGGTGAAGCAATCCCTCTTTCTGAGGACCACAAACCGAATAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCAATGTCCCGTGCTTTCGGTAACAAGATGTTGAAACAGTTTGTCGTGGCAGATCCCGAGATTCAGGATCTTGAAGTAGACAAGGACATCGAGCTGCTCGTTCTCGCAAGCGATGGAGTTTGGGACGTGGTACGCAACGAGGATGCAGTGTTAGTTGCAGGAAAGGAAGAAGACCCCGAGGCAGCAGCTCGGAAGCTAACCAAAGCAGCGTTTACCCGGGGTAGCGCTGACAATATAACATGCATCGTGGTGAAGTTCCATCACGACAATGCAGGTCCTGCTACCGATACTCGAGAAAACAACTGA 1281 45.9 MLRKANTFSLLAYLSLSLSLLYPPFLSCGTLFRLDSSSFYPEWDHRFDARPFTFPLIPLDPTSNVSDFPIILPMVCSYNIRNVIAQAGHVGIISRRVQIINIWRSLPSNFGFVHTWKREYRTSLMMMVDTGASENRGPVVDKHPEKDEDGGYASGGWKSDDGKLSWGYSSFRGKRATMEDFFDIKMSKVNGQTVCLFGIFDGHGGSRAAEFLKNHLFENLMKHPKFLMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKAGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPEIQDLEVDKDIELLVLASDGVWDVVRNEDAVLVAGKEEDPEAAARKLTKAAFTRGSADNITCIVVKFHHDNAGPATDTRENN 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48090074 48094092 - Lag0020103.1 Lac5g3019 609661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g3019 426 ProSitePatterns PPM-type phosphatase domain signature. 196 204 IPR000222 GO:0043169(InterPro)
Lac5g3019 426 Gene3D - 157 416 IPR036457 -
Lac5g3019 426 SMART PP2C_4 155 409 IPR001932 -
Lac5g3019 426 Pfam Protein phosphatase 2C 169 404 IPR001932 -
Lac5g3019 426 SUPERFAMILY PP2C-like 163 412 IPR036457 -
Lac5g3019 426 CDD PP2Cc 167 411 IPR001932 -
Lac5g3019 426 ProSiteProfiles PPM-type phosphatase domain profile. 165 411 IPR001932 -
Lac5g3019 426 MobiDBLite consensus disorder prediction 135 154 - -
Lac5g3019 426 FunFam Probable protein phosphatase 2C 76 157 417 - -
Lac5g3019 426 PANTHER PROTEIN PHOSPHATASE 148 410 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac5g3019 426 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0725 Lac-Chr2:5585682 Lac5g3019 Lac-Chr5:48090074 3.70E-53 dispersed
Lac3g0450 Lac-Chr3:3427757 Lac5g3019 Lac-Chr5:48090074 9.40E-26 dispersed
Lac5g0780 Lac-Chr5:10381177 Lac5g3019 Lac-Chr5:48090074 5.10E-10 dispersed
Lac5g2701 Lac-Chr5:45472452 Lac5g3019 Lac-Chr5:48090074 1.40E-48 dispersed
Lac5g3019 Lac-Chr5:48090074 Lac8g1754 Lac-Chr8:35770777 7.50E-90 dispersed
Lac5g3019 Lac-Chr5:48090074 Lac5g3027 Lac-Chr5:48155987 1.70E-33 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g3019 K17506 - csv:101203681 674.085