Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g3020 | ATGAATTCAGCTCTCCTCAGAGGGTTGGCATCTAGTTCTGATGGAACTAGAAGCACTGAGAAGCTATTGAAATCTTCTTCCTCTAATAATCGCATGCCTGAAGGCTTGCGCTCAGGGAAGAAAATTCTTGATCCACAAGGGCCTTTTCTTCAAAGTTGGAACAAGATGTTTGTGCTGTCTTGTGTGATTGCTGTATCGTTGGATCCTCTGTTCTTTTATGTTCCTGTGATTGATAATAGAAGGAAGTGTCTTAGGTTAGATGAGAAAGTGGAGACTGTAGTCTGTATATTGCGATTATTTACAGACTTATTCTATGTTGTGCATATTGTTTTTCAGTTTCGTACAGGATTTATTGCTCCCTCTTCCCGAGTATTTGGAAGAGGTGTTTTAGTAGAAGATTATCGGGCGATAGCAATGAGGTATCTGTCATCATACTTTCTAATTGACATTTCTTCAGTCCTCCCACTTCCACAGGTGAGGAAAGTTTCTTGGGACTTGAGAGTATGTCTGCTCTACTGTTAA | 522 | 40.23 | MNSALLRGLASSSDGTRSTEKLLKSSSSNNRMPEGLRSGKKILDPQGPFLQSWNKMFVLSCVIAVSLDPLFFYVPVIDNRRKCLRLDEKVETVVCILRLFTDLFYVVHIVFQFRTGFIAPSSRVFGRGVLVEDYRAIAMRYLSSYFLIDISSVLPLPQVRKVSWDLRVCLLYC | 173 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 48096509 | 48097030 | + | Lag0020104.1 | Lac5g3020 | 609662 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g3020 | 173 | SUPERFAMILY | Voltage-gated potassium channels | 44 | 161 | - | - | |
| Lac5g3020 | 173 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Lac5g3020 | 173 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Lac5g3020 | 173 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 22 | 159 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g3020 | Lac-Chr5:48096509 | Lac6g2474 | Lac-Chr6:42515033 | 2.70E-38 | dispersed | |
| Lac5g3020 | Lac-Chr5:48096509 | Lac5g3022 | Lac-Chr5:48113600 | 9.70E-20 | proximal | |
| Lac11g0144 | Lac-Chr11:1326104 | Lac5g3020 | Lac-Chr5:48096509 | 4.70E-55 | wgd | |
| Lac5g3020 | Lac-Chr5:48096509 | Lac7g0142 | Lac-Chr7:1112196 | 2.40E-39 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g3020 | K05391 | - | csv:101214911 | 229.95 |