Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g3021 ATGGGAAGTTCGAGACCGTCGATTACGAAGGACTTGCTGAAATTTGCTGTATTATGTCAACTTGTGCCAAGGTTTCTTCGAATCTATCCACTGTATAAAGAAGTTACAAGGACCTCGGGCATACTCATCGAAACGGCTTGGGCGGGAGCTGCATTTAATCTCTTGCTGTACATGCTAGCCGGTCATATATTTGGAGCAACCTGGTACTTATGTTCCATAGAACGAGAAGCCCAGTGCTGGCACGATGCTTGTAGCAAGCATCCTGGCTGTAACTCTACTTCCTTGCATTGTCATTACAATTCCAGTGTTGGAGGGAACCTATTCCTCAATGTTTCTTGCCCAATTGAAAAGCCAAATGTAGGACATTTTAACTTCGGAATATTCCTTCAAGCCCTTCGATCTGATATTGTGGAGTCAGATTTTCCGAAGAAGTTCATTCACTGCTTTTGGTGGGGTTTAAGGAATCTAAGTTCTTTGGGTCAAAATCTCACTACAAGTACTTGCACATGGGAAAACTGCTTCGCCATTTTGGTTTGCATCTCTGGCTTAGTGTTGTTTGCGTCTCTCCTAGGCAACGTCCAGATGTATTGGCGATCCACAAACACAAGGGTGGAGGAGATGAGCGTGAGAAGGAGAGATGTTGAACAATGGATGTCGCATCGCTTACTCCCTGAGAATATGAGGGAGCGGGTTCGAAGGTATAAACATTACACGTGGCAAGAAACCAGAGGTGTTGATGAACACAATCTGCTGCTTAATCTGCCTAGAGACCTCCAACGAGATATCAAGCGCCATCTTTGCTTGGCTTTGCTTATGCGAGTTCCAATGTTTGAAAAGATGGATGAACAATTGTTGGACGCGATGTGTGCCCGTCTCAAGCCAGTGTTGTACACACAAGAAAGCTGCGTTGTTCGGGAAGGCGATCCAGTTGATGAGATGCTCTTCATCATGGGAGGCAAGCTCCTAACCATGACTACAAATGGTGGGAGAACTGGTTTCTTCAACTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTGCTGACTTGGGCTCTAGAAGACCCTCATTCCTCAACCAATCTCCCCATTTCAACTCGAACCGTCCGATCCCTGACAGAAGTCGAAGCCTTTGCTTTAAAACCAGACGACTTGAAATTTGTAGCCTCTCAATACCGCAGGCTTCACAGCAAGCAGCTGCGCCAAATATTCAGATTCTACTCACACCAATGGAGAACCTGGGCAGCTTGCTTTTTACAAGCAGCATGGCGTCGCCATCGAAGAAAGCAGCTAAGAGAGTCTCTCAGGGAAGAAGAGAGTAGGTTGAAAGACGCATTGTCTTGTCTCGAGGGGCGGTCGCCAAGTTTAGGCGCCACCATTTATGCATCTAGATTCGCTGCTAACATGCTTCGCGCCATGAGAAGGAATGGTACTAGGAAAGCTAGGATGTCCATGCTGCTTCAGAAGCCAGCAGAGCCTGATTTTACTTTGGAAGATAACAACACATAG 1512 46.43 MGSSRPSITKDLLKFAVLCQLVPRFLRIYPLYKEVTRTSGILIETAWAGAAFNLLLYMLAGHIFGATWYLCSIEREAQCWHDACSKHPGCNSTSLHCHYNSSVGGNLFLNVSCPIEKPNVGHFNFGIFLQALRSDIVESDFPKKFIHCFWWGLRNLSSLGQNLTTSTCTWENCFAILVCISGLVLFASLLGNVQMYWRSTNTRVEEMSVRRRDVEQWMSHRLLPENMRERVRRYKHYTWQETRGVDEHNLLLNLPRDLQRDIKRHLCLALLMRVPMFEKMDEQLLDAMCARLKPVLYTQESCVVREGDPVDEMLFIMGGKLLTMTTNGGRTGFFNSDFLMAGDFCGEELLTWALEDPHSSTNLPISTRTVRSLTEVEAFALKPDDLKFVASQYRRLHSKQLRQIFRFYSHQWRTWAACFLQAAWRRHRRKQLRESLREEESRLKDALSCLEGRSPSLGATIYASRFAANMLRAMRRNGTRKARMSMLLQKPAEPDFTLEDNNT 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48103085 48105914 + Lag0020105.1 Lac5g3021 609663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g3021 503 Gene3D Jelly Rolls 274 395 IPR014710 -
Lac5g3021 503 CDD CAP_ED 276 396 IPR000595 -
Lac5g3021 503 SUPERFAMILY cAMP-binding domain-like 205 402 IPR018490 -
Lac5g3021 503 Gene3D Helix hairpin bin 201 267 - -
Lac5g3021 503 SMART cnmp_10 276 408 IPR000595 -
Lac5g3021 503 SUPERFAMILY Voltage-gated potassium channels 22 241 - -
Lac5g3021 503 Coils Coil 433 453 - -
Lac5g3021 503 FunFam Cyclic nucleotide-gated ion channel 1 274 393 - -
Lac5g3021 503 Gene3D - 9 197 - -
Lac5g3021 503 ProSiteProfiles cAMP/cGMP binding motif profile. 276 361 IPR000595 -
Lac5g3021 503 FunFam Cyclic nucleotide-gated ion channel 1 203 267 - -
Lac5g3021 503 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 3 490 - -
Lac5g3021 503 Pfam Ion transport protein 22 196 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0144 Lac-Chr11:1326104 Lac5g3021 Lac-Chr5:48103085 2.80E-209 dispersed
Lac5g3021 Lac-Chr5:48103085 Lac6g2474 Lac-Chr6:42515033 1.40E-151 dispersed
Lac5g3021 Lac-Chr5:48103085 Lac5g3022 Lac-Chr5:48113600 2.50E-100 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g3021 K05391 - csv:101214911 823.157