Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g3027 ATGTGCGATATCACTACTATGATTAAGACGAAGAATACTCGCCGAAGACGGCTGAGAGTTCGTAAGCTGAGGTACAAATGGCAGAGGAAGGTACACGCGGTGGAAGGTGAGGGCAACGAGTTGAGCGAAAATGGAGTTTCGGAGTCGAATGGTGATCGAGTAGTACTCTGTGAGAAGGAACCGATTTCGGCGTTTGATTGCGGATTGTACAGTGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGACGAAGTGAGAGTGGAATTGGGATTGCCGACGGCTATTAATGATGCGAAGTACGATTTCTTCGCAGTGTACGACGGTCACGGCGGGGCGCAAGTGGCGCAGGTGTGCCGTGAGCGGTTGCACCGGATTGTGGCGGAGGAGATCGGGGATCGGGGAGAGATGGATGAGGCGGAGTGGGGGAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGAAGAAGTGAACAGCGGCGCTGCCGTGATGAAGACGGTCGGCTCGGCGGTGGTGGCGGCCTTGATCGGAAAGGAGGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCCAGGGATGGAATTGCCTTGCCCTTGTCTAACGATCATAAGCCTGGCAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGGAGGGTCATAAACTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCGAGATCGATCGGTGATGAATATCTTAAACCATTTGTTATCTCCAAACCAGAAGTTACTGTGACCAAGCGAACCAACAACGACGAGTTCCTCATACTAGGAAGCGATGGTCTGTGGGACGTCGTTTCGAACGAAATTGCCTGCAACATAGTGAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCACTAAAGGTGGCAAACGACAGCCATGTTGCTGAAGCTGCAGCAGTGTTGGCGGAGCTCGCGGTGGCTCGTGGAAGCAAGGACAACATCAGTGTGATAGTAGTAGATTTGAGGAAACCAAACAGTTCCTCTCCATGA 1038 52.12 MCDITTMIKTKNTRRRRLRVRKLRYKWQRKVHAVEGEGNELSENGVSESNGDRVVLCEKEPISAFDCGLYSEMSIIGRRKEMEDEVRVELGLPTAINDAKYDFFAVYDGHGGAQVAQVCRERLHRIVAEEIGDRGEMDEAEWGRLMERCFERMDEEVNSGAAVMKTVGSAVVAALIGKEEVVVANCGDCRAVLARDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTNNDEFLILGSDGLWDVVSNEIACNIVRRCFGGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKPNSSSP 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48155987 48158113 - Lag0020111.1 Lac5g3027 609669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g3027 345 PANTHER PROTEIN PHOSPHATASE 42 336 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac5g3027 345 Gene3D - 66 343 IPR036457 -
Lac5g3027 345 ProSiteProfiles PPM-type phosphatase domain profile. 69 337 IPR001932 -
Lac5g3027 345 FunFam Protein phosphatase 2C 50 86 344 - -
Lac5g3027 345 SUPERFAMILY PP2C-like 69 339 IPR036457 -
Lac5g3027 345 SMART PP2C_4 60 335 IPR001932 -
Lac5g3027 345 Pfam Protein phosphatase 2C 72 330 IPR001932 -
Lac5g3027 345 CDD PP2Cc 70 337 IPR001932 -
Lac5g3027 345 ProSitePatterns PPM-type phosphatase domain signature. 103 111 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2870 Lac-Chr5:46927071 Lac5g3027 Lac-Chr5:48155987 8.20E-18 dispersed
Lac5g3027 Lac-Chr5:48155987 Lac7g2763 Lac-Chr7:46777990 1.60E-66 dispersed
Lac5g3019 Lac-Chr5:48090074 Lac5g3027 Lac-Chr5:48155987 1.70E-33 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g3027 K14497 - csv:101214188 555.829