Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g3027 | ATGTGCGATATCACTACTATGATTAAGACGAAGAATACTCGCCGAAGACGGCTGAGAGTTCGTAAGCTGAGGTACAAATGGCAGAGGAAGGTACACGCGGTGGAAGGTGAGGGCAACGAGTTGAGCGAAAATGGAGTTTCGGAGTCGAATGGTGATCGAGTAGTACTCTGTGAGAAGGAACCGATTTCGGCGTTTGATTGCGGATTGTACAGTGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGACGAAGTGAGAGTGGAATTGGGATTGCCGACGGCTATTAATGATGCGAAGTACGATTTCTTCGCAGTGTACGACGGTCACGGCGGGGCGCAAGTGGCGCAGGTGTGCCGTGAGCGGTTGCACCGGATTGTGGCGGAGGAGATCGGGGATCGGGGAGAGATGGATGAGGCGGAGTGGGGGAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGAAGAAGTGAACAGCGGCGCTGCCGTGATGAAGACGGTCGGCTCGGCGGTGGTGGCGGCCTTGATCGGAAAGGAGGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCCAGGGATGGAATTGCCTTGCCCTTGTCTAACGATCATAAGCCTGGCAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGGAGGGTCATAAACTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCGAGATCGATCGGTGATGAATATCTTAAACCATTTGTTATCTCCAAACCAGAAGTTACTGTGACCAAGCGAACCAACAACGACGAGTTCCTCATACTAGGAAGCGATGGTCTGTGGGACGTCGTTTCGAACGAAATTGCCTGCAACATAGTGAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCACTAAAGGTGGCAAACGACAGCCATGTTGCTGAAGCTGCAGCAGTGTTGGCGGAGCTCGCGGTGGCTCGTGGAAGCAAGGACAACATCAGTGTGATAGTAGTAGATTTGAGGAAACCAAACAGTTCCTCTCCATGA | 1038 | 52.12 | MCDITTMIKTKNTRRRRLRVRKLRYKWQRKVHAVEGEGNELSENGVSESNGDRVVLCEKEPISAFDCGLYSEMSIIGRRKEMEDEVRVELGLPTAINDAKYDFFAVYDGHGGAQVAQVCRERLHRIVAEEIGDRGEMDEAEWGRLMERCFERMDEEVNSGAAVMKTVGSAVVAALIGKEEVVVANCGDCRAVLARDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTNNDEFLILGSDGLWDVVSNEIACNIVRRCFGGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKPNSSSP | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 48155987 | 48158113 | - | Lag0020111.1 | Lac5g3027 | 609669 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g3027 | 345 | PANTHER | PROTEIN PHOSPHATASE | 42 | 336 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Lac5g3027 | 345 | Gene3D | - | 66 | 343 | IPR036457 | - | |
Lac5g3027 | 345 | ProSiteProfiles | PPM-type phosphatase domain profile. | 69 | 337 | IPR001932 | - | |
Lac5g3027 | 345 | FunFam | Protein phosphatase 2C 50 | 86 | 344 | - | - | |
Lac5g3027 | 345 | SUPERFAMILY | PP2C-like | 69 | 339 | IPR036457 | - | |
Lac5g3027 | 345 | SMART | PP2C_4 | 60 | 335 | IPR001932 | - | |
Lac5g3027 | 345 | Pfam | Protein phosphatase 2C | 72 | 330 | IPR001932 | - | |
Lac5g3027 | 345 | CDD | PP2Cc | 70 | 337 | IPR001932 | - | |
Lac5g3027 | 345 | ProSitePatterns | PPM-type phosphatase domain signature. | 103 | 111 | IPR000222 | GO:0043169(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2870 | Lac-Chr5:46927071 | Lac5g3027 | Lac-Chr5:48155987 | 8.20E-18 | dispersed | |
Lac5g3027 | Lac-Chr5:48155987 | Lac7g2763 | Lac-Chr7:46777990 | 1.60E-66 | dispersed | |
Lac5g3019 | Lac-Chr5:48090074 | Lac5g3027 | Lac-Chr5:48155987 | 1.70E-33 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g3027 | K14497 | - | csv:101214188 | 555.829 |