Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g3033 ATGTCGTCTACGCTGCTAGAGGTGACCCGCTCGTCCCACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGTTACAGAGTCACCGAGTCCGCAACATGATTGATACCATCATGTCGACCACCGAAAAACTCGTTGAGATATATGAAGATAAGGATAGTGCCAGGAAAGATGAGATTGCGGCACTTGGAGGCCAAACAACATCGGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGGGAGAGGCAGCAATTGATGATGTTTTGGCTGTTGATACTGCCGAGGAAAAGTTACCACATGAAAATTTTTGTTTGCGTGTGTTCTTCTGGGAGGCTAACTTTGCTTCGAAGAACATGATGGGAGCCATGGAGCATATTCTTCGTCTAACTTTGTCTCAAAAGGAATCTAGGCGTATTCTTCGTGAACAGATTGAGGATTTAACCGCCCAGGAGCATATCCAATGGCAACAACGTTGTAAACTTAAATGGCTTAAAGAGGGTGATGAAAATAGTAAATTCTTCCATCGCATCTTGGCAGCCCGTAAAAGGAAGAATTCGATTACTGAGGTGTTATCTCGAGGTGGGGTCAGTTTGGTTTCAGCCAATGATATCGAAAAGGAATTTGTTGATTTTTATCGGCTTTTGTTCACCAAAGATAATCATACTCGTTTTCTGCCAACCAATGTTGATTGGTGCCCAATTAGTGAAGCTCAATCAAAAGCCTTGGAAGTTGCTATTTCTGAAGAAGAAGTTTTTAATGCTCTGAACTCTCTTGGTTCTAGTAAGTCTCCAGGTCCGGATGGTTATACAGCTGAATTCTTTAAATTCTCTTGGAACACTATCAAACAGGATCTAATGTCTATGATTCAAGATTTTTATAACACTGGAATTATTAACGTGGCTCTAAATGAAACTTATATTTGCTTGATTCCAAAGAGGTTAGACTCCAAATCTGTTGTTGATTATCGTCCCATTAGCCTAATCTCATGTGCTTATAAGATCATTGCTCGAGTTTTATCTAATCGTTTGAAGCATGTATTGTCGTCTACCATAGCAGATAATCAAATGGCTTTTGTTGCTAACAGACAGATTTTGGATGCTTCTTTAATTGCTAATGAATTAATAGATGATTGGCAAATTTCCTCGAAGAGAGGGGTGGTTCTTAAATTAGATTTGGAAAAGGCATTTGATAAAGTAGACTGGGATTTTCTGGATGCAGTCCTACATGCAAAGGGCTTTGGTTCAGTTTGGAGAAAATGGATTCGTGGTTGTATCTCTAGTGTGAATTATTCAATCATCATTAACGTGAAACCTAGAGGTAAAATTATCCCTTCTCGTGGCATTCGTCAAGGTGATCCTCTGTCTCCTTTCTTATTTATTCTGGTTTCAGATTGTTTGAGTAGACTCCTTTCCCACAGCGCTAGTTTGGGTAAAATTATGGCTCATCCAGTTGGTGCTTCATCTTTTAGTCTGAATCATTTACAATTTGCAGACGATACACTTTTATTCTCTTCTTTTGATTCAGATGCGTTGAACAAGCTTTTTGAAGTTATCAATATATTTGAATTGGCTTCTGGTCTAAATGTCAACCTTGCCAAGAGTGAAATCTTAGGGATCCATATCGATGATACAGAGTTGGAAGATATGGCTGCTAAATTTGGTTGTAAGCGTGGTTTTTGGCCTAGCACTTTTCTTGGACTTCCTTTGGGTGGTAACCCGAAAAACTCTGTTTTCTGGCAACCAGTTATTGAGAAGATTCAGCATAAATTACATAGTTGGAAATATGCCTTTATATCCAAAGGAGGAAGGCATACACTCATCCAAGCCACTCTTTCGAGTATGCCGACGTATTTTCTGTCTTTGTTTAAACTTCCAAGTAAGGTTGCTAAATCTCTTGACAAGCTAGTACGAGATTTTTTCTGGGAAGGTTCTCAAGGGGATGGTGGTATGCATAATGTTAATTGGGATAAGACTCAGCTTCCGAAATTACTGGGAGGTCTTGGCATTGGCAATTTTCAGCTTCGAAATACAGCCTTGTTAGCTAAATGGATTTGGAGGTTTTTGCACGAAGAAGATTCTCTTTGGCGTAATCTCATTATTGCTAAATATTACAACTCGGAGGATGTTAGACATTGGCCTTTTCCCATTCAAAGGGGATCTTTCAAATCTCCTTGGCGCTTTATTTGTACTACTATCGATCAGATTACTAGTCGTATTCATCGAATTATTGGTAATGGTTGTAGCACATTTTTTTGGAAGGATGCATGGCTGAATGGAGTGATTCTCTCAAATCTCTTCCCTCGCCTTTATCGGTTAACTACCAATCCAAACGCCAGGGTTGCAGAAGTATGGAACTCTACAGAATCAGCATGGAATCTGAGTCCTCGTCGTCACCTTAATGAGTTTGAGATTATTGAATGGGCAAATTTATCCTATCTTCTGTCTCCTATTCGACTTCGGAATATGAATGACTCTTGGTCTTGGCCTCTTGAAGCATCCAAATTATTCTCTGTTAAATCCTTGATGGTTGATCTTTTGGGTGGTTCTAATACTACTTTGAATAATTTATATTCGGTGATATGGAAAGATAATTATCCTAAAAAGATAAAAATCTTTCTATGGGAGCTTAGTCTTGGGGCTATCAATACAGCGGATCGTCTTCAACGTAGAATGCCTCATTTTTCCCTTTCGCCATCTTGGTGTGTTATGTGCTCATCAAATATGGAGAATACGGGTCATCTATTTGTCACTTGTTCTTTTGCTACCAAGTATTGGAATTTGATGCTTGAAGCTTTCGGATGGCATTTACCGATGTCAAATAACATTCATGACTTTCTAGCGTCTATTTTTGTTGGTCATCCTTTTCAAGGAACAAAGAGGATTTTATGGCTGGCTTTTAATAGAGTCTTCTTTTGGTTTCTTTGGAACGAAAGAAATGGAAGAATTTTTAGGGATGTATCCTCAACCTTTGATTCTTTTTTTGAAAAGGTAGCAATTGATCTAAAGCTTATATTGGACAATTTATGTCGACGAGCTTGGTTTGGAAAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAATGAGGATGAGGGTCTACTGAAAGAGGAACCACAAATTGAGTTCAGCGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTGTACAACCAATATATTAATTCGAAATTTGGAGAGGCTATCGAGTACTCTTCTTACCTGGATGTTTTTTCACTACCTCAGAAAATTTCTCGCAAACTAAAGATTTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCGTTGCAAGATCTTGATCGAATATTCTCAAAGGTTGAAACTGAATTTGAAGAGCGATGGGTTACTGGTACAATTGAAGGATGGGAGAACACTGGTGAAGATAATGGTCATGATCCTGCCCAGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTGGAACTAGGTCCTGAAAGGTTGAAGGAGGGGTTGGCAGCATTGGGGCTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGAATACACCTCTTCAATTGTTGGACAAAAAACACTTCGCGAAACTGTCTCGGCAACCGATTCAGAATGGGGCAGCTGCAGCTTCACTAAACAATGAAAATTTGAAACAAGTTGCTCTGTTGGAAGCAAAAGTTGAAAAATTGTGCGATCTTCTCGACGAGACAATTGCCCGAACCAAAGATAACATTGTTAAGAAGCAAGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACACAAGCTGAGTCTGAAAGTGATGATGAAGAGCAGCAGATCTATAATCCGCTCAAGCTCCCAATGGGTTGGGATGGGAAACCTATACCTTACTGGCTCTACAAGCTTCATGGCCTCGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAATTTTAATGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAACAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGATATGAGCTGATACATGGTTCTGTACTGTATTATTTGAAATATGAGAAGTTCGCAATCGTTCTGCCATCAGCATCCTCGATACCGTTGCTAGTTCGTGCTGTTCTGACCTGTGGCGTGTATGATACTACAAAGTTCGAGGATGCTTATGCTTTCAGGCATTCAGCTGTCAACAATGACTAG 4506 40.19 MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEGEAAIDDVLAVDTAEEKLPHENFCLRVFFWEANFASKNMMGAMEHILRLTLSQKESRRILREQIEDLTAQEHIQWQQRCKLKWLKEGDENSKFFHRILAARKRKNSITEVLSRGGVSLVSANDIEKEFVDFYRLLFTKDNHTRFLPTNVDWCPISEAQSKALEVAISEEEVFNALNSLGSSKSPGPDGYTAEFFKFSWNTIKQDLMSMIQDFYNTGIINVALNETYICLIPKRLDSKSVVDYRPISLISCAYKIIARVLSNRLKHVLSSTIADNQMAFVANRQILDASLIANELIDDWQISSKRGVVLKLDLEKAFDKVDWDFLDAVLHAKGFGSVWRKWIRGCISSVNYSIIINVKPRGKIIPSRGIRQGDPLSPFLFILVSDCLSRLLSHSASLGKIMAHPVGASSFSLNHLQFADDTLLFSSFDSDALNKLFEVINIFELASGLNVNLAKSEILGIHIDDTELEDMAAKFGCKRGFWPSTFLGLPLGGNPKNSVFWQPVIEKIQHKLHSWKYAFISKGGRHTLIQATLSSMPTYFLSLFKLPSKVAKSLDKLVRDFFWEGSQGDGGMHNVNWDKTQLPKLLGGLGIGNFQLRNTALLAKWIWRFLHEEDSLWRNLIIAKYYNSEDVRHWPFPIQRGSFKSPWRFICTTIDQITSRIHRIIGNGCSTFFWKDAWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRLRNMNDSWSWPLEASKLFSVKSLMVDLLGGSNTTLNNLYSVIWKDNYPKKIKIFLWELSLGAINTADRLQRRMPHFSLSPSWCVMCSSNMENTGHLFVTCSFATKYWNLMLEAFGWHLPMSNNIHDFLASIFVGHPFQGTKRILWLAFNRVFFWFLWNERNGRIFRDVSSTFDSFFEKVAIDLKLILDNLCRRAWFGKIREYHRRHPAARVVDVNEDEGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSLPQKISRKLKISRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVETEFEERWVTGTIEGWENTGEDNGHDPAQHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKHFAKLSRQPIQNGAAAASLNNENLKQVALLEAKVEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGYELIHGSVLYYLKYEKFAIVLPSASSIPLLVRAVLTCGVYDTTKFEDAYAFRHSAVNND 1501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48212810 48224346 + Lag0020117.1 Lac5g3033 609675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g3033 1501 Coils Coil 1288 1315 - -
Lac5g3033 1501 Pfam zinc-binding in reverse transcriptase 852 941 IPR026960 -
Lac5g3033 1501 SUPERFAMILY DNA/RNA polymerases 258 555 IPR043502 -
Lac5g3033 1501 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 307 585 IPR000477 -
Lac5g3033 1501 ProSiteProfiles Zinc finger matrin-type profile. 1349 1380 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Lac5g3033 1501 PANTHER NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED 148 668 IPR052343 -
Lac5g3033 1501 Pfam SF3a60/Prp9 C-terminal 1325 1442 IPR024598 GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro)
Lac5g3033 1501 MobiDBLite consensus disorder prediction 1298 1317 - -
Lac5g3033 1501 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 335 553 IPR000477 -
Lac5g3033 1501 CDD RT_nLTR_like 320 585 - -
Lac5g3033 1501 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 1062 1109 IPR031774 -
Lac5g3033 1501 Pfam Replication stress response SDE2 C-terminal 1159 1239 IPR025086 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0929 Lac-Chr12:10013909 Lac5g3033 Lac-Chr5:48212810 7.80E-08 dispersed
Lac2g0833 Lac-Chr2:6582213 Lac5g3033 Lac-Chr5:48212810 4.50E-193 dispersed
Lac2g2149 Lac-Chr2:26848339 Lac5g3033 Lac-Chr5:48212810 2.20E-158 dispersed
Lac3g0439 Lac-Chr3:3358857 Lac5g3033 Lac-Chr5:48212810 1.90E-277 dispersed
Lac3g2140 Lac-Chr3:26669623 Lac5g3033 Lac-Chr5:48212810 5.70E-242 dispersed
Lac4g0732 Lac-Chr4:18227616 Lac5g3033 Lac-Chr5:48212810 4.40E-208 dispersed
Lac4g1545 Lac-Chr4:34112726 Lac5g3033 Lac-Chr5:48212810 1.50E-138 dispersed
Lac5g3033 Lac-Chr5:48212810 Lac6g0420 Lac-Chr6:3437150 0.00E+00 dispersed
Lac6g0020 Lac-Chr6:221309 Lac5g3033 Lac-Chr5:48212810 7.20E-87 dispersed
Lac7g0995 Lac-Chr7:8548272 Lac5g3033 Lac-Chr5:48212810 2.10E-83 dispersed
Lac8g1201 Lac-Chr8:25882376 Lac5g3033 Lac-Chr5:48212810 4.20E-83 dispersed
Lac5g3033 Lac-Chr5:48212810 Lac9g2716 Lac-Chr9:45388649 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g3033 K12827 - csv:101205916 766.148