Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g3038 ATGGGCTACGGCAGGCTCAACGAAACCGACCCCGGCGGCACCTCTGGTGCCGTCACCTTCCAACTCTCCGACCACGCCGTTTCCTCTCCCTCTCCCAACCGGAGGCGGAGGCGACTTCTCCTTCTCTCCCTAATGTCCCTCATTCTCATCGTCGCCGCCGCCGTCTCCGCCACCTTCCTCGTCGCCCTCCGAACCGCCTCCCGCGCCCGATCCGACCCGAACCTCCCTCGAAAACCGACTCAGGCCATTTCTAGGGCTTGTAGCCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGAATCTCTCAACGCCAACGAGCAGGATCTCGTCCACATTTCCTTCAATTTGACTCTCCACCATCTCAACCGAGCGCTCTATTTGTCCTCTGAGATCTCCTCTCTTCAAATGGATCTTCGCGTCCGCTCCGCCTACGACGCTTGTCTCGAACTCCTCGACGACTCTGTCGACGCTCTCACTCGCTCCTTGCAGTCCGTCGCGCCGCCTTCCTCCGACGCCGCCCCGCAGCGACTCGGCTCCTCTCAGGACGTCGTCACCTGGCTCAGTGCGGCTCTCACGAATCAAGATACCTGTACGGATGGATTCTCTGAACTCAGCGGGAGTGTCAAAGATCAAATGACGGATAAACTCCACAATTTGTCGGAGCTTGTGAGCAATTGCTTGGCGCTGTTTTCCGGTGGCGAAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAAGGCCGGCGAGAAGGAGGATAGTTCCGGTGACTTCCCCGGCTGGATGAGTCGGCGGGAGAGGAGGCTGCTGACGCTGCCGGTGGGAGCGCTGCAGGCCGATATTGTGGTTTCGAAGGACGGGAACGGAACGGTGAAGACGATCGCCGAAGCGATCAAAAAGGCGCCGGAATACAGTAGCAAAAGGACGATCATCTATGTAATGGCAGGAAGATACGAAGAGAAGAATCTCAAGGTAGGGAGGAAGAAAACGAACCTGATGTTTGTTGGAGATGGCAAGGGCAAGACTGTCATTTCCGGTGCTAAGAGCATCTTCGACAACGTGACAACTTTTCACACGGCGTCGTTTGCGGCCACCGGCGCCGGCTTAATCTTGAGGGACATGACATTTGAGAATTGGGCTGGACCAGGGCGGCACCAGGCGGTGGCGCTCCGAGTAGGAGCGGACCACGCCGTCGTGTACCGGTGCAACATAATCGGCTATCAAGACACTCTGTACGTCCATTCGAACCGCCAATTCTACCGAGAGTGCGACATTTACGGCACCGTGGATTTCATCTTCGGCAATGCGGCGGTGGTGTTTCAGAACTGCAGCATCTACGCCCGAAAGGCGATGGACCTTCAAAAGAACACGATCACGGCCCAAAACCGGAAGGATCCGAATCAGAACACCGGAATTTCCATCCATGCTTGCCGGATTCTGGCCGCCTCCGATTTGGCCTCCTCCAACAGCAGCAACCCGACTTATCTGGGCCGTCCGTGGAAATTATACTCTAGAGTCGTTTACATGCTTTCGTACATAGGCGGCCACGTGCACCCACGCGGTTGGCTGGAGTGGAACGCCACGTTTGCACTTGACACGTTGTATTACGGTGAGTATATGAATTCCGGGCCAGGTGGGGCTGTGGGCCAGAGGGTGACGTGGCCCGGGTATCGGGTCATAACGTCCACGGTGGAGGCGAGTAAGTTCACGGTGGCGCAGTTCATTTACGGGTCGTCGTGGTTGCCGTCGACTGGAGTCGCGTTTCTCGGAGGGCTAAATGTGTAA 1812 57.06 MGYGRLNETDPGGTSGAVTFQLSDHAVSSPSPNRRRRRLLLLSLMSLILIVAAAVSATFLVALRTASRARSDPNLPRKPTQAISRACSRTRFPTLCVNSLLDFPESLNANEQDLVHISFNLTLHHLNRALYLSSEISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPPSSDAAPQRLGSSQDVVTWLSAALTNQDTCTDGFSELSGSVKDQMTDKLHNLSELVSNCLALFSGGETSDFSGVPIQNKRRLMKAGEKEDSSGDFPGWMSRRERRLLTLPVGALQADIVVSKDGNGTVKTIAEAIKKAPEYSSKRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGAKSIFDNVTTFHTASFAATGAGLILRDMTFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMDLQKNTITAQNRKDPNQNTGISIHACRILAASDLASSNSSNPTYLGRPWKLYSRVVYMLSYIGGHVHPRGWLEWNATFALDTLYYGEYMNSGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48276947 48279826 + Lag0020122.1 Lac5g3038 609680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g3038 603 FunFam Pectinesterase 79 238 - -
Lac5g3038 603 SUPERFAMILY Pectin lyase-like 285 599 IPR011050 -
Lac5g3038 603 NCBIfam pectinesterase inhibitor domain 56 235 IPR006501 GO:0004857(InterPro)
Lac5g3038 603 SMART PMEI_2 78 234 IPR006501 GO:0004857(InterPro)
Lac5g3038 603 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Lac5g3038 603 Pfam Pectinesterase 289 586 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac5g3038 603 CDD PMEI-like_3 86 236 - -
Lac5g3038 603 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 237 IPR035513 -
Lac5g3038 603 Gene3D - 283 601 IPR012334 -
Lac5g3038 603 PANTHER PECTINESTERASE 42 592 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac5g3038 603 FunFam Pectinesterase 283 601 - -
Lac5g3038 603 Pfam Plant invertase/pectin methylesterase inhibitor 82 234 IPR006501 GO:0004857(InterPro)
Lac5g3038 603 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 236 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0013 Lac-Chr5:155912 Lac5g3038 Lac-Chr5:48276947 1.60E-120 dispersed
Lac5g3038 Lac-Chr5:48276947 Lac8g1609 Lac-Chr8:33968880 4.70E-114 dispersed
Lac11g0154 Lac-Chr11:1433242 Lac5g3038 Lac-Chr5:48276947 9.10E-211 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g3038 - - - 0.0