Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g3041 ATGGATTTGGACAGTATCGAGTGTGTGTCATCGTCAGATGGTCTCGATGAGGATGAGATCCATCTGCACCACACTCTTCATCCTTATTCCCATTCTCATCATCACCCAGAGTTGTCAGCGTCGAAGCCTCGTAATGGAAACAACAATAGCGCTGTGAACGGCCCCACTGCAACTGCGCCGGCAACTAGCGTCCATGAATTGCTGGAGTGCCCTGTCTGCACTAATTCTATGTATCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCCTTGGGGTGCCCTGAGATATTTCCATACTACAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCCTATAGTTGCCCCTACGCTGGGTCGGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTGCCCATCTGAGGGACGATCATAAGGTGGACATGCACACTGGCTGCACGTTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTAATTGTTTCGGTCAATACTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTACATGGCTTTCCTTCGATTCATGGGCGATGAGAACGAGGCTCGAACCTACAGCTACAGTCTTGAGGTTGGTGGATATGGGCGGAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTGATCATTCAGAGAAATATGGCTCTTTTCTTCTCTGGTGGGGATAGAAAGGAACTGAAGCTGAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGGGTCTGCATACCGAACCTTTGTAGCTAA 996 47.39 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSASKPRNGNNNSAVNGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48308721 48311552 - Lag0020125.1 Lac5g3041 609683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g3041 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270(InterPro)
Lac5g3041 331 CDD RING-HC_SIAHs 68 106 - -
Lac5g3041 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515(InterPro)
Lac5g3041 331 CDD Sina 184 312 - -
Lac5g3041 331 FunFam E3 ubiquitin-protein ligase SINAT3 11 121 - -
Lac5g3041 331 Pfam Sina, zinc finger 119 194 - -
Lac5g3041 331 Pfam Sina, TRAF-like domain 214 311 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lac5g3041 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 41 313 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lac5g3041 331 SUPERFAMILY TRAF domain-like 123 315 - -
Lac5g3041 331 MobiDBLite consensus disorder prediction 28 58 - -
Lac5g3041 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 122 IPR013083 -
Lac5g3041 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Lac5g3041 331 FunFam E3 ubiquitin-protein ligase SINAT5-like 179 311 - -
Lac5g3041 331 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 70 105 IPR049548 -
Lac5g3041 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 176 IPR013083 -
Lac5g3041 331 FunFam E3 ubiquitin-protein ligase SINAT3 122 178 - -
Lac5g3041 331 SUPERFAMILY RING/U-box 59 110 - -
Lac5g3041 331 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g3041 Lac-Chr5:48308721 Lac8g2069 Lac-Chr8:39178006 4.10E-136 dispersed
Lac5g3041 Lac-Chr5:48308721 Lac5g3042 Lac-Chr5:48312599 5.30E-200 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g3041 K04506 - csv:105434867 674.855