Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g3042 ATGGATTTGGATAGTATTGAGTGTGTATCGTCTTCAGATGGTCTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATCCTTATTCCCATTCTCATCTTCATCCAGAGTTGTCAGCAACGAAGCCTCGTAATGGAAACAACAATAACGCTATTACAGGCCCCACTGCCACTGCACCGGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGCACCAATTCTATGTATCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCGCTTGAGAAGGTGGCAGAGTCACTGGAATTGCCTTGCAAGTATTATTCCTTGGGGTGCCCTGAGATATTTCCATACTACAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCCTACAATTGCCCATATGCTGGGTCGGAATGCTCTGCTGTTGGAGATATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTAGAAAATGCCACTTGGATGCTTACTGTTTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTAGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCGCGAACCTACAGCTACAGTCTCGAGGTGGGTGGATACGGGCGAAAACTAATATGGGAGGGCACCCCACGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGACTTATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCTGATGCCGGGGTCTGCATACCGAACCTGTGTAGCTAA 996 46.08 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHLHPELSATKPRNGNNNNAITGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48312599 48315080 - Lag0020126.1 Lac5g3042 609684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g3042 331 SUPERFAMILY RING/U-box 59 110 - -
Lac5g3042 331 CDD RING-HC_SIAHs 68 106 - -
Lac5g3042 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515(InterPro)
Lac5g3042 331 CDD Sina 184 312 - -
Lac5g3042 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 176 IPR013083 -
Lac5g3042 331 FunFam E3 ubiquitin-protein ligase SINAT3 122 178 - -
Lac5g3042 331 Pfam Sina, zinc finger 119 194 - -
Lac5g3042 331 Pfam Sina, TRAF-like domain 214 311 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lac5g3042 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270(InterPro)
Lac5g3042 331 MobiDBLite consensus disorder prediction 31 55 - -
Lac5g3042 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 49 313 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lac5g3042 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Lac5g3042 331 SUPERFAMILY TRAF domain-like 123 315 - -
Lac5g3042 331 FunFam E3 ubiquitin-protein ligase SINAT3 11 121 - -
Lac5g3042 331 MobiDBLite consensus disorder prediction 41 55 - -
Lac5g3042 331 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 70 105 IPR049548 -
Lac5g3042 331 FunFam E3 ubiquitin-protein ligase SINAT5-like 179 311 - -
Lac5g3042 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 122 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0956 Lac-Chr12:10487448 Lac5g3042 Lac-Chr5:48312599 5.90E-136 dispersed
Lac5g3042 Lac-Chr5:48312599 Lac8g2069 Lac-Chr8:39178006 3.50E-135 dispersed
Lac5g3041 Lac-Chr5:48308721 Lac5g3042 Lac-Chr5:48312599 5.30E-200 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g3042 K04506 - csv:101215696 677.167