Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g3058 ATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGCCTAACCAAGATTCACCATGCCTCTTCCTCCAAGCCCACTAAAACAAATCAGCTCACTGTCAGAAGAAAGAGCCGATGCTGCTCTGCCATAGCTATTGATGCTCCATCTTCTTTAGCAGATGCTGCGGGAATCAGATGGGGTTCGACTACTTTGCAAGGCTTGCGGGAAGAAATGGAGGACGATGCTGTTGTGCGCTCTGATGGTCTTAATGGCTTCTTGTTTGCTGCAGTATTCGATGGCCATGGTGGCTATTCTTCTGTCAAGTTCCTCAGGGAAGAGCTGTACAAAGACTGCGTAGCAGCTTTACAAGGTGGGCTGCTGTTGAAAGGAGGGAATTTTGAGGTGATAAAAGCGGCTTTGGAGAAGGCTTTTGATGATACTGATAAAAGATTGCTCCTTTTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTTCCACTGCAACTGCAGCATTCATACGAAATGATGTTATGTTCATTTCACATGTTGGTGACTCTTGTGTTGTCTTGTCACGTTCCGGAGGAGCACAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAACAACAGCACCTCACTGCAAGAGATTAGAAGAATTAGAGAAGCAGGTGGATGGATTGTTAACGGGAGAATCTGTGGAGACATCTCTGTATCTCGTGCATTTGGTGACATACGATTCAAGACAAAGAAATACGAGATGCTAAAGAAAGGAGTTGAAGAAGGGAGATGGTCTGAAAAATTTGTTTCTCGTGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTTTCAAGTTACTCTTGGATCAAATATTGAGTTTATACTGATAGCATCTGATGGCTTATGGGATTACATGAATAGCTCTGATGCAGTTAAGTTTGTTCGGGATCAACTTAGACAGCACGGTGATGTTCAGCTAGCTTGTGAAGCCCTCGCGCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATCAGCGTTATCATGGCTGATTTGGGGCGGACAGATTGGCGGAATTTGCCCCTTAAGCAAGACAATGTCATATTGGAACTGGCTCAAGCTTTTGCTACGATTGGGATTGTTTCTTTTGGAACCTATCATCAGGAGAGTTTTCATCTTTCATCAGAAGTAACAGATGTTTTGAGACAATCCGACCTTTCCATACAAGATCTAAAGCTCGAATGTGTTACTTCTTTTGTCTTGTTGTCTTGA 1251 43.96 MALLSPRLHRFRLTKIHHASSSKPTKTNQLTVRRKSRCCSAIAIDAPSSLADAAGIRWGSTTLQGLREEMEDDAVVRSDGLNGFLFAAVFDGHGGYSSVKFLREELYKDCVAALQGGLLLKGGNFEVIKAALEKAFDDTDKRLLLLLEAAGEEDESGSTATAAFIRNDVMFISHVGDSCVVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKYEMLKKGVEEGRWSEKFVSRVQFNGDLVTASPEIFQVTLGSNIEFILIASDGLWDYMNSSDAVKFVRDQLRQHGDVQLACEALAQAALDKGSQDNISVIMADLGRTDWRNLPLKQDNVILELAQAFATIGIVSFGTYHQESFHLSSEVTDVLRQSDLSIQDLKLECVTSFVLLS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48393851 48397482 + Lag0020142.1 Lac5g3058 609700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g3058 416 SUPERFAMILY PP2C-like 55 346 IPR036457 -
Lac5g3058 416 CDD PP2Cc 56 345 IPR001932 -
Lac5g3058 416 SMART PP2C_4 47 343 IPR001932 -
Lac5g3058 416 FunFam Protein phosphatase 2C 57 56 352 - -
Lac5g3058 416 PANTHER PROTEIN PHOSPHATASE 2C 49 344 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lac5g3058 416 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
Lac5g3058 416 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169(InterPro)
Lac5g3058 416 Gene3D - 56 351 IPR036457 -
Lac5g3058 416 Pfam Protein phosphatase 2C 59 338 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g3058 Lac-Chr5:48393851 Lac8g1754 Lac-Chr8:35770777 8.00E-28 dispersed
Lac5g3058 Lac-Chr5:48393851 Lac8g2934 Lac-Chr8:46361483 1.10E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g3058 K04457 - csv:101218076 664.84