Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g3088 | ATGGGATCCGCAGGAGGCGCAGCTGTTCGCGATGACGAGGAGGCGCAGCTGTTCGCGATGCAGTTGGCGAGCGCCTCGGTTGTTCCGATGGTGCTGAAGGCGGCGATTGAGCTGGACGTGCTGGAGATCATTGGCAGGGAAGAGGGGGGCTTGCTGTCCCCCTCCCAAATCGCCTCTCAGCTCTCTGGGGCCAAGAACCCAGAGGCCGACGTGGTCCTGGACCGCATGCTCCGCCTGCTGGCCAGCTACTCCATCCTCACCTGCTCCCTCAACACTCTCCCCGACGGCACCGTCCAGAGGCTCTACGGCCTCGCCCCTGTATCCAAGTTCTTGATCAAGAATCAAGACGGCGTCTCCATTGCCCCACTCTGTCTCATGAATCAGGACAAGGTCCTCATGGAGAGCTGGTACCATTTGAAAGATGCAGTGCTTGAAGGTGGGATCCCATTCAACAGAGCGTACGGAATGACTGCATTCGATTACCATGGAACAGATCCGAGATTCAACAAGGTTTTCAACAGGGGAATGTCCGACCATTCCACCATTACCATGAAGAAGATTCTGGAGACCTACAAAGGCTTCGAAGGCCTTAATTCCGTAGTGGATGTGGGCGGTGGGACTGGAGCTGTTCTCAACATGATAGTTTCCAAGTACCCTTCTATAAGGGGCATCAACTTCGACTTGCCCCATGTCATTCAGGATGCCCCTGCCTACCCAGGCGTCCAACATGTTGGGGGCGACATGTTTGTGAGCGTGCCCAAGGGGGATGCTATTTTCATGAAGTGGATCTGTCACGACTGGAGCGACCAGCACTGTCTCAAGTTCTTAAACAACTGCTACCATGCGCTGCCGGAGCATGGCAAGGTGATCGTGGCCGAATGCATTCTTCCGGTAGCACCAGACACCAGCCTCGCCACCAAGGGAGTCATTCACATCGATGTCATAATGTTGGCTCACAACCCCGGAGGCAAAGAGAGGACCCAGAACGAGTTCCACGCCTTGGCTAAGGCTGCTGGATTTCAAGGTTTCAAGGTCCAGTCTTGTGCTTTCAACACCTACGTCATGGAATTTCTCAAGACAGTTTAG | 1086 | 54.79 | MGSAGGAAVRDDEEAQLFAMQLASASVVPMVLKAAIELDVLEIIGREEGGLLSPSQIASQLSGAKNPEADVVLDRMLRLLASYSILTCSLNTLPDGTVQRLYGLAPVSKFLIKNQDGVSIAPLCLMNQDKVLMESWYHLKDAVLEGGIPFNRAYGMTAFDYHGTDPRFNKVFNRGMSDHSTITMKKILETYKGFEGLNSVVDVGGGTGAVLNMIVSKYPSIRGINFDLPHVIQDAPAYPGVQHVGGDMFVSVPKGDAIFMKWICHDWSDQHCLKFLNNCYHALPEHGKVIVAECILPVAPDTSLATKGVIHIDVIMLAHNPGGKERTQNEFHALAKAAGFQGFKVQSCAFNTYVMEFLKTV | 361 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 48558109 | 48559808 | - | Lag0020172.1 | Lac5g3088 | 609730 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g3088 | 361 | Gene3D | - | 4 | 111 | IPR036388 | - | |
| Lac5g3088 | 361 | Gene3D | Vaccinia Virus protein VP39 | 112 | 359 | IPR029063 | - | |
| Lac5g3088 | 361 | PIRSF | O-mtase | 4 | 359 | IPR016461 | GO:0008168(InterPro) | |
| Lac5g3088 | 361 | Pfam | O-methyltransferase domain | 136 | 341 | IPR001077 | GO:0008171(InterPro) | |
| Lac5g3088 | 361 | Pfam | Dimerisation domain | 30 | 81 | IPR012967 | GO:0046983(InterPro) | |
| Lac5g3088 | 361 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 116 | 357 | IPR029063 | - | |
| Lac5g3088 | 361 | PANTHER | O-METHYLTRANSFERASE | 14 | 348 | IPR016461 | GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER) | |
| Lac5g3088 | 361 | FunFam | Caffeic acid 3-O-methyltransferase | 4 | 111 | - | - | |
| Lac5g3088 | 361 | SUPERFAMILY | Winged helix DNA-binding domain | 11 | 114 | IPR036390 | - | |
| Lac5g3088 | 361 | FunFam | Caffeic acid O-methyltransferase | 112 | 359 | - | - | |
| Lac5g3088 | 361 | CDD | AdoMet_MTases | 200 | 291 | - | - | |
| Lac5g3088 | 361 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 20 | 359 | IPR016461 | GO:0008168(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2950 | Lac-Chr10:44100123 | Lac5g3088 | Lac-Chr5:48558109 | 8.60E-58 | dispersed | |
| Lac1g0439 | Lac-Chr1:9669615 | Lac5g3088 | Lac-Chr5:48558109 | 4.20E-26 | dispersed | |
| Lac5g0781 | Lac-Chr5:10402932 | Lac5g3088 | Lac-Chr5:48558109 | 7.40E-110 | dispersed | |
| Lac5g0787 | Lac-Chr5:10494577 | Lac5g3088 | Lac-Chr5:48558109 | 1.30E-63 | dispersed | |
| Lac5g3088 | Lac-Chr5:48558109 | Lac9g2146 | Lac-Chr9:40995222 | 3.60E-61 | dispersed | |
| Lac5g3088 | Lac-Chr5:48558109 | Lac13g1233 | Lac-Chr13:11058000 | 9.30E-41 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g3088 | K13066 | - | csv:101204109 | 649.047 |