Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0031 ATGTCGATCTCTTCTTCTTCCGACTGCTTCATTGACTCTCACCTGCTCTGTGACGAGGACTCCTCCGGTATTTTGTCTGGAGACTCGCCGGAGTACTCCTCGGATTTTGAATCGCCGGCCAGTAGTGAGGATTCTATCGCCAGCTTCATAGAGGACGAGAGGCACTTCGTTCCTGGGATTGATTACTTGTCGCGCTTTCAGTCTCAATCGTTGGATTCTTCCGCTAGAGCTGACACTGTTGCATGGATTCTTAAGGTCCAAGCATATTACGGTTTTCAACCACTCACCGCATACCTCTCCGTCAACTACTTGGATCGGTTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCAATGCAGCTTCTTTCAGTGGCTTGTTTGTCACTTGCAGCTAAAATGGAGGAACCCCTTGTTCCTTCTTTCCTGGATCTCCAGATTGAAGGAGCAAAATATATATTCGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTTACAACTTTGAATTGGCGGCTGCGATCTGTAACACCCTTCAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACAGAAATTATTCTGTCAAATATTCGAGACGCTAGCTTTCTTGAGTACTGGCCTTCGTGCATTGCTGCCGCAGCCTTACTTTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGGACCCTGAACATGCCGAGTCTTGGTGCAATGGACTCAGCAAAGAGAAAATTGTCGGGTGTTATCGGTTAATGCAGCCGTTAACAGTGGAGAGTCGTCGTAGGAAGCCCCCGAAAGTGATACCACAGCTCCGAGTCAGAATCCGAGCTGGGTTGAGGTACAGTACTGACTCGTCATCTTCCTCATCATCATCAACAAGGTTGGGTTTTAAAAGGAGAAAATTGAATAATTGCGTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTAAGAGCAGACGAATAA 1014 46.75 MSISSSSDCFIDSHLLCDEDSSGILSGDSPEYSSDFESPASSEDSIASFIEDERHFVPGIDYLSRFQSQSLDSSARADTVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPMQLLSVACLSLAAKMEEPLVPSFLDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDASFLEYWPSCIAAAALLCAANEIPNLTLLDPEHAESWCNGLSKEKIVGCYRLMQPLTVESRRRKPPKVIPQLRVRIRAGLRYSTDSSSSSSSSTRLGFKRRKLNNCVWVEDDKENSKLRADE 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 306800 308932 + Lag0004000.1 Lac6g0031 609800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0031 337 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Lac6g0031 337 SMART Cyclin_C_2 178 311 IPR004367 -
Lac6g0031 337 SUPERFAMILY Cyclin-like 160 283 IPR036915 -
Lac6g0031 337 SMART cyclin_7 81 169 IPR013763 -
Lac6g0031 337 Pfam Cyclin, C-terminal domain 178 279 IPR004367 -
Lac6g0031 337 Gene3D - 59 176 - -
Lac6g0031 337 Pfam Cyclin, N-terminal domain 45 176 IPR006671 -
Lac6g0031 337 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Lac6g0031 337 Gene3D - 48 239 - -
Lac6g0031 337 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Lac6g0031 337 FunFam D2/4-type cyclin 59 176 - -
Lac6g0031 337 PANTHER CYCLINS 39 275 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0393 Lac-Chr2:2884461 Lac6g0031 Lac-Chr6:306800 1.00E-34 dispersed
Lac5g2622 Lac-Chr5:44733752 Lac6g0031 Lac-Chr6:306800 7.30E-51 dispersed
Lac6g0031 Lac-Chr6:306800 Lac6g0280 Lac-Chr6:2263960 4.60E-34 dispersed
Lac1g2790 Lac-Chr1:48993907 Lac6g0031 Lac-Chr6:306800 2.40E-44 transposed
Lac6g0985 Lac-Chr6:8916746 Lac6g0031 Lac-Chr6:306800 3.50E-48 transposed
Lac9g2113 Lac-Chr9:40781493 Lac6g0031 Lac-Chr6:306800 2.00E-30 transposed
Lac13g0233 Lac-Chr13:1657789 Lac6g0031 Lac-Chr6:306800 1.20E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0031 K18810 - csv:101210686 617.461