Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0038 | ATGGACTTTACAGTTCTAAATTCAGAGTTGTGTTCTATCAAAAGTGATTCCATGGCCGTCAAGTGCATAAAGAGAAGGCGGAGAAGTGCTTCTTCTTCCTCCACAGCTGGAGATGATCAGCCACATAAGTCAGTGGCAGATCAATCCACCGCCACCAAAAGAAGCTCCAAGTTTCGTGGAGTTAGCAGGCATCGATGGACGGGACGATTCGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAGCAAGGAGCTTATGATGAAGAAGAATCAGCTGCCAGAGCATATGACTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACTAATTTCCCGGTATCTGACTATGAGAAAGAAATTAAAATAATGAAAACTGTGACAAAGGAAGAATACTTGGCTACTTTAAGAAGAAGAAGCAGTGGTTTCTCGAGGGGTGTATCCAAATATCGAGGAGTCGCAAGGCACCATCACAATGGGAGGTGGGAAGCAAGAATAGGAAGAGTATTTGGGAACAAGTATCTGTACCTTGGAACCTATAGTACACAAGAGGAGGCAGCTCGGGCATACGACATAGCAGCGATAGAATACCGAGGGATAAACGCAGTGACCAACTTCGAGCTGAGCAGTTACATAAGATGGCTTAAACCCCAACAGGAAAAGCCTAATAATTTTTCCCCACCATTATTATTGTCATCTAATTATAATCAGCACTTTGTTGATCCAATTCCTAATCCTATGATGATGATGTTCCAACAACAAGATCCAATAATAATCCCACAAAGTAGAAGCTGTAGTAATAGTAGCAGCTCTACCACAGCCCTGGGCCTCCTCCTCAAGTCTTCCCTCTTCAAACAACTTCTTCAGAAGAATGTTGATCTCAATAATAATAATAATGTCAATGGAGATGCCCAACCTCAAGAGGAAGACCTTATTTCTCATCATCCTAATCCCTACTTGAACTTGCACCAACCAACCAACACCTTCTCTCTTCCTCTCCCTTTTCATTGCTAA | 1035 | 42.8 | MDFTVLNSELCSIKSDSMAVKCIKRRRRSASSSSTAGDDQPHKSVADQSTATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSDYEKEIKIMKTVTKEEYLATLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFELSSYIRWLKPQQEKPNNFSPPLLLSSNYNQHFVDPIPNPMMMMFQQQDPIIIPQSRSCSNSSSSTTALGLLLKSSLFKQLLQKNVDLNNNNNVNGDAQPQEEDLISHHPNPYLNLHQPTNTFSLPLPFHC | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 352507 | 354571 | - | Lag0004007.1 | Lac6g0038 | 609807 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0038 | 344 | PRINTS | Ethylene responsive element binding protein signature | 58 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | PRINTS | Ethylene responsive element binding protein signature | 196 | 216 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | SUPERFAMILY | DNA-binding domain | 56 | 122 | IPR016177 | GO:0003677(InterPro) | |
Lac6g0038 | 344 | FunFam | AP2-like ethylene-responsive transcription factor | 155 | 216 | - | - | |
Lac6g0038 | 344 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 43 | 229 | - | - | |
Lac6g0038 | 344 | ProSiteProfiles | AP2/ERF domain profile. | 156 | 214 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | Gene3D | AP2/ERF domain | 155 | 216 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | Gene3D | AP2/ERF domain | 56 | 122 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | Pfam | AP2 domain | 56 | 112 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | Pfam | AP2 domain | 155 | 206 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | SUPERFAMILY | DNA-binding domain | 155 | 215 | IPR016177 | GO:0003677(InterPro) | |
Lac6g0038 | 344 | CDD | AP2 | 155 | 216 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | SMART | rav1_2 | 57 | 126 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | SMART | rav1_2 | 156 | 220 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | MobiDBLite | consensus disorder prediction | 26 | 60 | - | - | |
Lac6g0038 | 344 | CDD | AP2 | 56 | 122 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | ProSiteProfiles | AP2/ERF domain profile. | 57 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0038 | 344 | MobiDBLite | consensus disorder prediction | 29 | 56 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g2723 | Lac-Chr4:46172242 | Lac6g0038 | Lac-Chr6:352507 | 1.80E-76 | dispersed | |
Lac6g0038 | Lac-Chr6:352507 | Lac6g1794 | Lac-Chr6:28856523 | 5.50E-67 | dispersed | |
Lac6g0038 | Lac-Chr6:352507 | Lac8g0535 | Lac-Chr8:7699221 | 2.70E-90 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23947 | PF00847 | AP2 | 1.50E-09 | CL0081 | Lac | TF |
Pathway information
