Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0038 ATGGACTTTACAGTTCTAAATTCAGAGTTGTGTTCTATCAAAAGTGATTCCATGGCCGTCAAGTGCATAAAGAGAAGGCGGAGAAGTGCTTCTTCTTCCTCCACAGCTGGAGATGATCAGCCACATAAGTCAGTGGCAGATCAATCCACCGCCACCAAAAGAAGCTCCAAGTTTCGTGGAGTTAGCAGGCATCGATGGACGGGACGATTCGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAGCAAGGAGCTTATGATGAAGAAGAATCAGCTGCCAGAGCATATGACTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACTAATTTCCCGGTATCTGACTATGAGAAAGAAATTAAAATAATGAAAACTGTGACAAAGGAAGAATACTTGGCTACTTTAAGAAGAAGAAGCAGTGGTTTCTCGAGGGGTGTATCCAAATATCGAGGAGTCGCAAGGCACCATCACAATGGGAGGTGGGAAGCAAGAATAGGAAGAGTATTTGGGAACAAGTATCTGTACCTTGGAACCTATAGTACACAAGAGGAGGCAGCTCGGGCATACGACATAGCAGCGATAGAATACCGAGGGATAAACGCAGTGACCAACTTCGAGCTGAGCAGTTACATAAGATGGCTTAAACCCCAACAGGAAAAGCCTAATAATTTTTCCCCACCATTATTATTGTCATCTAATTATAATCAGCACTTTGTTGATCCAATTCCTAATCCTATGATGATGATGTTCCAACAACAAGATCCAATAATAATCCCACAAAGTAGAAGCTGTAGTAATAGTAGCAGCTCTACCACAGCCCTGGGCCTCCTCCTCAAGTCTTCCCTCTTCAAACAACTTCTTCAGAAGAATGTTGATCTCAATAATAATAATAATGTCAATGGAGATGCCCAACCTCAAGAGGAAGACCTTATTTCTCATCATCCTAATCCCTACTTGAACTTGCACCAACCAACCAACACCTTCTCTCTTCCTCTCCCTTTTCATTGCTAA 1035 42.8 MDFTVLNSELCSIKSDSMAVKCIKRRRRSASSSSTAGDDQPHKSVADQSTATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSDYEKEIKIMKTVTKEEYLATLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFELSSYIRWLKPQQEKPNNFSPPLLLSSNYNQHFVDPIPNPMMMMFQQQDPIIIPQSRSCSNSSSSTTALGLLLKSSLFKQLLQKNVDLNNNNNVNGDAQPQEEDLISHHPNPYLNLHQPTNTFSLPLPFHC 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 352507 354571 - Lag0004007.1 Lac6g0038 609807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0038 344 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 PRINTS Ethylene responsive element binding protein signature 196 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 SUPERFAMILY DNA-binding domain 56 122 IPR016177 GO:0003677(InterPro)
Lac6g0038 344 FunFam AP2-like ethylene-responsive transcription factor 155 216 - -
Lac6g0038 344 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 43 229 - -
Lac6g0038 344 ProSiteProfiles AP2/ERF domain profile. 156 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 Gene3D AP2/ERF domain 155 216 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 Gene3D AP2/ERF domain 56 122 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 Pfam AP2 domain 56 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 Pfam AP2 domain 155 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 SUPERFAMILY DNA-binding domain 155 215 IPR016177 GO:0003677(InterPro)
Lac6g0038 344 CDD AP2 155 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 SMART rav1_2 57 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 SMART rav1_2 156 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 MobiDBLite consensus disorder prediction 26 60 - -
Lac6g0038 344 CDD AP2 56 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 ProSiteProfiles AP2/ERF domain profile. 57 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0038 344 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2723 Lac-Chr4:46172242 Lac6g0038 Lac-Chr6:352507 1.80E-76 dispersed
Lac6g0038 Lac-Chr6:352507 Lac6g1794 Lac-Chr6:28856523 5.50E-67 dispersed
Lac6g0038 Lac-Chr6:352507 Lac8g0535 Lac-Chr8:7699221 2.70E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23947 PF00847 AP2 1.50E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0038 - - - 0.0