Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0040 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGCCATTAAACCCTGAGCTCTCACTGGAACCCTGTTTGAACCGCAGACTATGTACCCTCAACTCCTCTCGTCCACTCCTCACTCTCACCACTACACGAAAATCATCTCCAAAATGCCAATACTCATGGAACACGCAGCAGCAGCAACCACCCTTCGAACCAGGCTCTCAGGCCGATTCATTTTCGCCACAAACTCGCGCCGGAGTTGCTGCAGCATTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGGAAGGCTGCCCTTACAGTTGAGCCTAGACCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAAGGAAGGATTTGTATTGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCGCGGGAGTCTTGTGAATTTTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGGTCGGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACATGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCATGAGGCCTGAAGAAAGCAGCCGAGTAAATAACGCCAATCCCAGATACGGGGGTGACTTTGAATGGAGCAGATAG 819 47.37 MLRLQWLSSSLLPPLNPELSLEPCLNRRLCTLNSSRPLLTLTTTRKSSPKCQYSWNTQQQQPPFEPGSQADSFSPQTRAGVAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISKEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTIMRPEESSRVNNANPRYGGDFEWSR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 360355 363800 - Lag0004009.1 Lac6g0040 609809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0040 272 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 81 256 - -
Lac6g0040 272 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 272 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac6g0040 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 37 272 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lac6g0040 272 MobiDBLite consensus disorder prediction 50 77 - -
Lac6g0040 272 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lac6g0040 272 MobiDBLite consensus disorder prediction 50 76 - -
Lac6g0040 272 Gene3D Transcriptional Coactivator Pc4; Chain A 81 253 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0040 K26559 - - csv:101203474 446.817
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0040 Lac-Chr6:360355 Lac2g2729 Lac-Chr2:42253020 1.90E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0040 . 67 272 Whirly Transcription Factor Family AT1G14410 75.7 5.5e-91 331.6
Lac2g2729 . 204 363 Whirly Transcription Factor Family AT1G71260 67.5 8.6e-59 224.6
Lac6g0040 . 59 272 Whirly Transcription Factor Family AT2G02740 73.0 2.3e-89 326.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23948 PF08536 Whirly 1.50E-60 CL0609 Lac TF