Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0040 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGCCATTAAACCCTGAGCTCTCACTGGAACCCTGTTTGAACCGCAGACTATGTACCCTCAACTCCTCTCGTCCACTCCTCACTCTCACCACTACACGAAAATCATCTCCAAAATGCCAATACTCATGGAACACGCAGCAGCAGCAACCACCCTTCGAACCAGGCTCTCAGGCCGATTCATTTTCGCCACAAACTCGCGCCGGAGTTGCTGCAGCATTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGGAAGGCTGCCCTTACAGTTGAGCCTAGACCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAAGGAAGGATTTGTATTGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCGCGGGAGTCTTGTGAATTTTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGGTCGGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACATGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCATGAGGCCTGAAGAAAGCAGCCGAGTAAATAACGCCAATCCCAGATACGGGGGTGACTTTGAATGGAGCAGATAG 819 47.37 MLRLQWLSSSLLPPLNPELSLEPCLNRRLCTLNSSRPLLTLTTTRKSSPKCQYSWNTQQQQPPFEPGSQADSFSPQTRAGVAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISKEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTIMRPEESSRVNNANPRYGGDFEWSR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 360355 363800 - Lag0004009.1 Lac6g0040 609809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0040 272 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 81 256 - -
Lac6g0040 272 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 272 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac6g0040 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 37 272 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lac6g0040 272 MobiDBLite consensus disorder prediction 50 77 - -
Lac6g0040 272 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lac6g0040 272 MobiDBLite consensus disorder prediction 50 76 - -
Lac6g0040 272 Gene3D Transcriptional Coactivator Pc4; Chain A 81 253 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0040 Lac-Chr6:360355 Lac2g2729 Lac-Chr2:42253020 1.90E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23948 PF08536 Whirly 1.50E-60 CL0609 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0040 K26559 - csv:101203474 446.817