Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0050 ATGGCCGCTTTTAGAACCACCTTGTTTGTCTGTTCGCTGTTGTTCTTTGCAGTTGCAAATGCCGATTTCGAGGAGCTCGATGAATACTGGCGTGGCCGTGCCCTCCAAGCTCAGCAGGTCTCTCAAGATGCCTACAATCCTGACCCTGAATCTGTTACCGAACACTTCAACGCCGCCGTCAGCAGGGAGATCATGGGCGGCAACAGTACGCGAAGGAGCCTGAAGAAATACAGGGGTCCATGCTTGGCGACGAACCCCATTGACAGATGCTGGAGATGCGACCGAAATTGGGCCAAGAACCGAAAGAAGCTAGCGGAATGCGCGTTGGGGTTCGGGCACAAAACCATCGGCGGAAAGAGAGGGCCAATCTACGTGGTGACGGATGGCTCGGACGACGACCTGGTGAACCCGAGGCCCGGAACCCTGAGGCACGCGGTGATCCAGAGGGGCCCACTGTGGATCATCTTCGGGCGCAGCATGATCATCAGGCTGACCCAGGAGCTGATGATCTCGAGCGACAAGACCATCGACGCCCGCGGGTTCAACGTGCACGTAGCCTTCGGCGCAGGGCTGACGGTTCAGTTCGTGAACAACGTGATCATCCACGGGCTGCACGTGCACGACATCATCTCGAAATCCGGGGGAATGATCAGAGACGCGGTGGACCATTACGGGTTGAGGACACAGAGCGACGGGGATGGGATCTCGATCTTCGGGTCGAGCAATATTTGGATCGACCACGTGTCGATGTACAACTGCCAGGACGGGCTGATCGACGCGATCATGGGGTCGACAGCGATAACGATCTCGAACTCCCACTTCACGCATCACAACGAGGTGATGCTGTTCGGAGCAAGCGACTCGTACGCAGGGGACTCGGTGATGCAGATAACGCTGGCATTCAACCACTTCGGTAGAGGGCTGGTGCAGAGGATGCCGAGGTGCAGGTGGGGTTTCTTCCACGTGGTGAACAACGACTACACGCACTGGCTGATGTACGCGATCGGGGGGAGCCAGCACCCGACGATCGTGAGCCAAGGGAACCGTTTCATCGCTCCACCGAACCCGAACGCGAAGAAGGTTACGAAGAGAGATTACGCAGCGGAGAGCGAGTGGAAGAAGTGGTCGTGGAGATCGGAGGGAGACCTGCTGATGAATGGGGCAGTGTTTAATCCATCGGGAGACCAAAAGAAGGCGAGGAAGAAGGACGTGACCAGATACGATATGATTAAGTACAAGCCAGGAACCTACGTCAGGAGACTCACACGCTTCGCTGGGACACTTGAATGCCGACTAGGCAAACCATGCTAG 1311 56.75 MAAFRTTLFVCSLLFFAVANADFEELDEYWRGRALQAQQVSQDAYNPDPESVTEHFNAAVSREIMGGNSTRRSLKKYRGPCLATNPIDRCWRCDRNWAKNRKKLAECALGFGHKTIGGKRGPIYVVTDGSDDDLVNPRPGTLRHAVIQRGPLWIIFGRSMIIRLTQELMISSDKTIDARGFNVHVAFGAGLTVQFVNNVIIHGLHVHDIISKSGGMIRDAVDHYGLRTQSDGDGISIFGSSNIWIDHVSMYNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYAGDSVMQITLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKKVTKRDYAAESEWKKWSWRSEGDLLMNGAVFNPSGDQKKARKKDVTRYDMIKYKPGTYVRRLTRFAGTLECRLGKPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 432129 433538 + Lag0004019.1 Lac6g0050 609819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0050 436 SMART amb_all 159 356 IPR002022 -
Lac6g0050 436 Pfam Pectate lyase 190 350 IPR002022 -
Lac6g0050 436 SUPERFAMILY Pectin lyase-like 58 430 IPR011050 -
Lac6g0050 436 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
Lac6g0050 436 PRINTS Pollen allergen Amb family signature 107 124 IPR018082 -
Lac6g0050 436 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Lac6g0050 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Lac6g0050 436 PRINTS Pollen allergen Amb family signature 167 183 IPR018082 -
Lac6g0050 436 PRINTS Pollen allergen Amb family signature 375 399 IPR018082 -
Lac6g0050 436 PRINTS Pollen allergen Amb family signature 231 252 IPR018082 -
Lac6g0050 436 PRINTS Pollen allergen Amb family signature 131 156 IPR018082 -
Lac6g0050 436 PANTHER PECTATE LYASE 18-RELATED 19 433 IPR045032 GO:0030570(InterPro)
Lac6g0050 436 Pfam Pectate lyase, N terminus 25 74 IPR007524 GO:0030570(InterPro)
Lac6g0050 436 Gene3D - 84 429 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0050 Lac-Chr6:432129 Lac6g0705 Lac-Chr6:5993368 3.20E-136 dispersed
Lac8g0534 Lac-Chr8:7687450 Lac6g0050 Lac-Chr6:432129 3.40E-186 transposed
Lac13g0288 Lac-Chr13:2053129 Lac6g0050 Lac-Chr6:432129 1.30E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0050 K01728 - csv:101217922 750.74