Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0061 ATGAACCCCAAATCGAGGATATTTGATTCGGTTTTTTCAGTGGTGTCAGTTGAGATTTCAACAGCGAACCGGGTGGGCCCCCCACTCTCCCCGGTTCGTCGTTATGGGGATCCACGCCGGACCTTTTTCCGTCACCGTCAGGGCATTCTCGACCTTTTACGGACTCCCCTACTTGGGATCTACGCCTCACTCCTCTCTCTTTCTCTCTCCTCATCCCCCTTTCTCACTCTAAATTCTCCTCCACCATGCCCCTCACTTCTCCCTCCTCGCCCCTCTGATTCGCCGGCGCCGCCCTTCTCCCACCGGAAAATCCTTTGGCTTCGGGTTTGTTGCTCCTTTCTTCTTTCCGGGTTCATTTCTTGTTTCTTTTCAGGTTGGAAAAACATGTCATCCTCTAGACCTAGCCAGTCGTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTTGATGCAAAGCTCCAAGCAGATTTTGAGGAATCTGGGAATTCATTTGACTACTCAAGCTCAGTGCGTGTCACTAGTGATGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATACAACCATTTGGTTGCTTATTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGCCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGAACAGATGTAAGGACTATTTTCACTGCACCTAGTGCATCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCTGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCCGCCAAAGCAATTACTAGATTGCAATCTTTGCCTAGTGGGAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTCTTTGAACTAACAGGTTATGATAGAGTTATGGCTTATAAATTCCACGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTACATTATCCGGCCACTGACATTCCTCAAGCTGCACGCTTTTTGTTCATGAAGAATAAGGTCCGCATGATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATTTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCATTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCCTTGCAGCAACAAAAGAGAAAGAGATTATGGGGTTTGGTAGTATGTCATAATACGAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCTATTCACGTGAACAAGGAACTAGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTGCGTACACAGACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGAGATTGGGAATAACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCATGGCTTTCCGAATATCATATGGATTCAACAGGGTTAAGTACTGACAGCTTGTATGATGCAGGATACCCAGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCAGCTGTGAGGATAACTAATAATGATATGATATTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGATGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGACGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTTCTTGAAGTAGTAAAGACAAGAAGTCTGCCTTGGAAGGACTATGAAATGGATGCAATCCACTCTTTACAACTTATCCTCAGAAATACTTTTAAAGACACAGATACGTCTGAAGTAAATAGAAAATCAATTCAAATGACACTTGGTGACTTAAAAATTGAAGGTAGGCAAGAATTGGAATCAGTAACGAGTGAGATGGTAAGGTTAATTGAGACGGCTACTGTGCCGATTTTAGCAGTTGATGTAGATGGGTCAGTTAATGGTTGGAATTCAAAAATTGCTGAATTGACTGGACTCCCTGTGGATAAAGCTATTGGCAAGCATTTGCTAACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACACATGGATCTCATATTGAGGTTGGCTCCATCAGCCTAGTTGTAAATGCTTGTGCAAGTAGGGACTTGCGTGAAAATGTTGTGGGAGTGTGTTTTGTAGCCCAAGATATCACTGGTCAGAAGATGGTCATGGACAAGTTCACTCGATTAGAAGGCGATTACAAAGCTATTGTACAAAATCCTAATCCATTAATCCCCCCAATATTTGGTTCAGATGAATTTGGGTGGTGCTCAGAGTGGAATCCTGCAATGATAAAATTAACTGGATGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGTGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTTGTTTTGAACAATGCCATGAGTGGTCAAGATCCCGAAAAGGTTTCCTTTGGTTTCTTTGCTCGGAACGGGATGTACGTGGAATGTCTTCTATGTGTCAACAAAATCTTGGATAAAGACGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTTGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAACAAACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAGAATCCTCTTTCTGGGATGATCTTCTCAAGAAGATTATTGGAGCGCACTGAGTTGGGAATAGAACAAAAAAAAATTCTGCATACTTCCGTACACTGTCAAAAGCAGATTTCCAAGGTTCTCGATGAATCAGATCTTGATAAAATTATTGACGGGTTCATCGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTGTTAACGGTATCAACTAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTTAATGAGACTACAGAAGAGGCCATGTCCGAGACCTTATATGGAGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTTCTATTGATATCAGTTAGTTATGCGCCTGCAGGAGGCCAACTAACAATTTCAACCAACTTGACCAAGGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTGGAGTTCAGGATAACTTATGCTGGAGGAGGTATACCAGAATCATTGCTGAACGAGATGTTTGGTAGTGAGGAGGATGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTGGTGAAGCTGATGAATGGAGATGTACGATATATGAGGGAAGCGGGTAAGTCAAGCTTCATCATAACTGTCGAGCTTGCTGCAGCACACAAGTCAAGAACGTAG 3756 42.47 MNPKSRIFDSVFSVVSVEISTANRVGPPLSPVRRYGDPRRTFFRHRQGILDLLRTPLLGIYASLLSLSLSSSPFLTLNSPPPCPSLLPPRPSDSPAPPFSHRKILWLRVCCSFLLSGFISCFFSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVTSDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGITPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTSEVNRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSVNGWNSKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMIKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGMIFSRRLLERTELGIEQKKILHTSVHCQKQISKVLDESDLDKIIDGFIDLEMVEFTLHEVLTVSTSQVMIKSKGKGIQIVNETTEEAMSETLYGDSLRLQQVLADFLLISVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKSRT 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 490572 497306 - Lag0004030.1 Lac6g0061 609830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0061 1251 SUPERFAMILY GAF domain-like 326 525 - -
Lac6g0061 1251 PRINTS Phytochrome signature 446 467 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 747 763 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 558 578 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 766 781 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 859 879 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 643 662 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 676 694 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 839 856 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 261 283 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 361 380 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 Pfam GAF domain 348 527 IPR003018 GO:0005515(InterPro)
Lac6g0061 1251 SMART HisKA_10 1021 1082 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac6g0061 1251 PANTHER OS08G0260000 PROTEIN 129 1123 - -
Lac6g0061 1251 FunFam Phytochrome 533 664 - -
Lac6g0061 1251 ProSiteProfiles Histidine kinase domain profile. 1028 1247 IPR005467 -
Lac6g0061 1251 SUPERFAMILY GAF domain-like 536 713 - -
Lac6g0061 1251 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1078 1240 IPR036890 -
Lac6g0061 1251 Gene3D - 327 689 IPR029016 -
Lac6g0061 1251 Pfam PAS fold 747 861 IPR013767 GO:0006355(InterPro)
Lac6g0061 1251 Pfam PAS fold 877 999 IPR013767 GO:0006355(InterPro)
Lac6g0061 1251 SMART gaf_1 346 538 IPR003018 GO:0005515(InterPro)
Lac6g0061 1251 Pfam PAS fold 197 313 IPR013654 GO:0006355(InterPro)
Lac6g0061 1251 ProSiteProfiles PAS repeat profile. 744 814 IPR000014 -
Lac6g0061 1251 FunFam Phytochrome 740 871 - -
Lac6g0061 1251 Gene3D PAS domain 202 449 - -
Lac6g0061 1251 SUPERFAMILY PYP-like sensor domain (PAS domain) 891 997 IPR035965 -
Lac6g0061 1251 ProSiteProfiles PAS repeat profile. 877 929 IPR000014 -
Lac6g0061 1251 SUPERFAMILY PYP-like sensor domain (PAS domain) 750 857 IPR035965 -
Lac6g0061 1251 SMART pas_2 876 945 IPR000014 -
Lac6g0061 1251 SMART pas_2 746 812 IPR000014 -
Lac6g0061 1251 Gene3D PAS domain 891 1005 - -
Lac6g0061 1251 SMART HKATPase_4 1133 1245 IPR003594 -
Lac6g0061 1251 Coils Coil 525 545 - -
Lac6g0061 1251 SUPERFAMILY PYP-like sensor domain (PAS domain) 202 314 IPR035965 -
Lac6g0061 1251 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1133 1243 IPR003594 -
Lac6g0061 1251 Gene3D PAS domain 739 876 - -
Lac6g0061 1251 Pfam His Kinase A (phospho-acceptor) domain 1022 1082 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac6g0061 1251 Gene3D - 533 706 IPR043150 -
Lac6g0061 1251 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 346 518 IPR016132 -
Lac6g0061 1251 CDD HATPase_Phy-like 1132 1243 IPR044767 -
Lac6g0061 1251 ProSitePatterns Phytochrome chromophore attachment site signature. 446 455 IPR013516 -
Lac6g0061 1251 CDD PAS 755 861 IPR000014 -
Lac6g0061 1251 NCBIfam PAS domain S-box protein 751 867 IPR000014 -
Lac6g0061 1251 Gene3D - 1058 1239 IPR036890 -
Lac6g0061 1251 Pfam Phytochrome region 541 715 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 CDD PAS 888 999 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0061 K12120 - - csv:101208491 2134.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0396 Lac-Chr12:4469365 Lac6g0061 Lac-Chr6:490572 0.00E+00 dispersed
Lac6g0061 Lac-Chr6:490572 Lac7g0960 Lac-Chr7:8162827 3.00E-227 dispersed
Lac6g0061 Lac-Chr6:490572 Lac6g0064 Lac-Chr6:529084 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g0101 . 30 1213 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1446.8
Lac13g1678 . 28 1013 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.2
Lac8g2211 . 23 959 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1322.4
Lac4g1833 . 79 1023 Histidine Kinase Gene Family AT2G01830 53.6 3.7e-279 958.7
Lac12g0372 . 1068 2020 Histidine Kinase Gene Family AT2G01830 53.5 1.3e-276 950.3
Lac9g1967 . 283 1238 Histidine Kinase Gene Family AT2G01830 52.4 7.7e-269 924.5
Lac2g0516 . 1 984 Histidine Kinase Gene Family AT5G10720 57.9 5.5e-287 984.6
Lac6g0061 . 129 1248 Histidine Kinase Gene Family AT1G09570 80.7 0.0e+00 1842.8
Lac6g0064 . 1 1130 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lac12g0396 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1230.3
Lac7g0960 . 27 666 Histidine Kinase Gene Family AT1G09570 60.4 1.7e-229 793.9
Lac10g1014 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.2 0.0e+00 1258.4
Lac6g0061 . 149 1182 Histidine Kinase Gene Family AT2G18790 53.7 0.0e+00 1094.7
Lac7g0960 . 13 666 Histidine Kinase Gene Family AT2G18790 84.2 0.0e+00 1094.0
Lac12g0396 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 7.9e-314 1073.9
Lac6g0064 . 7 1065 Histidine Kinase Gene Family AT2G18790 51.5 1.7e-311 1066.2
Lac7g0961 . 45 414 Histidine Kinase Gene Family AT2G18790 70.0 3.2e-156 550.4
Lac12g0396 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.2 0.0e+00 1382.9
Lac6g0061 . 137 1242 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1119.0
Lac7g0960 . 21 668 Histidine Kinase Gene Family AT5G35840 58.7 9.3e-225 778.1
Lac10g1014 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1300.0
Lac6g0061 . 136 1243 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1140.6
Lac12g0396 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1115.5
Lac6g0064 . 8 1126 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1089.7
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G16250 79.6 7.1e-308 1054.3
Lac7g0961 . 45 475 Histidine Kinase Gene Family AT4G16250 71.0 6.0e-182 636.0
Lac10g1014 . 15 1113 Histidine Kinase Gene Family AT4G18130 64.0 0.0e+00 1404.0
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G18130 63.2 1.5e-235 813.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56