Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0061 ATGAACCCCAAATCGAGGATATTTGATTCGGTTTTTTCAGTGGTGTCAGTTGAGATTTCAACAGCGAACCGGGTGGGCCCCCCACTCTCCCCGGTTCGTCGTTATGGGGATCCACGCCGGACCTTTTTCCGTCACCGTCAGGGCATTCTCGACCTTTTACGGACTCCCCTACTTGGGATCTACGCCTCACTCCTCTCTCTTTCTCTCTCCTCATCCCCCTTTCTCACTCTAAATTCTCCTCCACCATGCCCCTCACTTCTCCCTCCTCGCCCCTCTGATTCGCCGGCGCCGCCCTTCTCCCACCGGAAAATCCTTTGGCTTCGGGTTTGTTGCTCCTTTCTTCTTTCCGGGTTCATTTCTTGTTTCTTTTCAGGTTGGAAAAACATGTCATCCTCTAGACCTAGCCAGTCGTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTTGATGCAAAGCTCCAAGCAGATTTTGAGGAATCTGGGAATTCATTTGACTACTCAAGCTCAGTGCGTGTCACTAGTGATGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATACAACCATTTGGTTGCTTATTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGCCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGAACAGATGTAAGGACTATTTTCACTGCACCTAGTGCATCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCTGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCCGCCAAAGCAATTACTAGATTGCAATCTTTGCCTAGTGGGAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTCTTTGAACTAACAGGTTATGATAGAGTTATGGCTTATAAATTCCACGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTACATTATCCGGCCACTGACATTCCTCAAGCTGCACGCTTTTTGTTCATGAAGAATAAGGTCCGCATGATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATTTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCATTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCCTTGCAGCAACAAAAGAGAAAGAGATTATGGGGTTTGGTAGTATGTCATAATACGAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCTATTCACGTGAACAAGGAACTAGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTGCGTACACAGACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGAGATTGGGAATAACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCATGGCTTTCCGAATATCATATGGATTCAACAGGGTTAAGTACTGACAGCTTGTATGATGCAGGATACCCAGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCAGCTGTGAGGATAACTAATAATGATATGATATTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGATGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGACGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTTCTTGAAGTAGTAAAGACAAGAAGTCTGCCTTGGAAGGACTATGAAATGGATGCAATCCACTCTTTACAACTTATCCTCAGAAATACTTTTAAAGACACAGATACGTCTGAAGTAAATAGAAAATCAATTCAAATGACACTTGGTGACTTAAAAATTGAAGGTAGGCAAGAATTGGAATCAGTAACGAGTGAGATGGTAAGGTTAATTGAGACGGCTACTGTGCCGATTTTAGCAGTTGATGTAGATGGGTCAGTTAATGGTTGGAATTCAAAAATTGCTGAATTGACTGGACTCCCTGTGGATAAAGCTATTGGCAAGCATTTGCTAACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACACATGGATCTCATATTGAGGTTGGCTCCATCAGCCTAGTTGTAAATGCTTGTGCAAGTAGGGACTTGCGTGAAAATGTTGTGGGAGTGTGTTTTGTAGCCCAAGATATCACTGGTCAGAAGATGGTCATGGACAAGTTCACTCGATTAGAAGGCGATTACAAAGCTATTGTACAAAATCCTAATCCATTAATCCCCCCAATATTTGGTTCAGATGAATTTGGGTGGTGCTCAGAGTGGAATCCTGCAATGATAAAATTAACTGGATGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGTGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTTGTTTTGAACAATGCCATGAGTGGTCAAGATCCCGAAAAGGTTTCCTTTGGTTTCTTTGCTCGGAACGGGATGTACGTGGAATGTCTTCTATGTGTCAACAAAATCTTGGATAAAGACGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTTGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAACAAACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAGAATCCTCTTTCTGGGATGATCTTCTCAAGAAGATTATTGGAGCGCACTGAGTTGGGAATAGAACAAAAAAAAATTCTGCATACTTCCGTACACTGTCAAAAGCAGATTTCCAAGGTTCTCGATGAATCAGATCTTGATAAAATTATTGACGGGTTCATCGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTGTTAACGGTATCAACTAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTTAATGAGACTACAGAAGAGGCCATGTCCGAGACCTTATATGGAGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTTCTATTGATATCAGTTAGTTATGCGCCTGCAGGAGGCCAACTAACAATTTCAACCAACTTGACCAAGGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTGGAGTTCAGGATAACTTATGCTGGAGGAGGTATACCAGAATCATTGCTGAACGAGATGTTTGGTAGTGAGGAGGATGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTGGTGAAGCTGATGAATGGAGATGTACGATATATGAGGGAAGCGGGTAAGTCAAGCTTCATCATAACTGTCGAGCTTGCTGCAGCACACAAGTCAAGAACGTAG 3756 42.47 MNPKSRIFDSVFSVVSVEISTANRVGPPLSPVRRYGDPRRTFFRHRQGILDLLRTPLLGIYASLLSLSLSSSPFLTLNSPPPCPSLLPPRPSDSPAPPFSHRKILWLRVCCSFLLSGFISCFFSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVTSDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGITPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTSEVNRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSVNGWNSKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMIKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGMIFSRRLLERTELGIEQKKILHTSVHCQKQISKVLDESDLDKIIDGFIDLEMVEFTLHEVLTVSTSQVMIKSKGKGIQIVNETTEEAMSETLYGDSLRLQQVLADFLLISVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKSRT 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 490572 497306 - Lag0004030.1 Lac6g0061 609830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0061 1251 SUPERFAMILY GAF domain-like 326 525 - -
Lac6g0061 1251 PRINTS Phytochrome signature 446 467 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 747 763 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 558 578 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 766 781 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 859 879 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 643 662 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 676 694 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 839 856 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 261 283 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 PRINTS Phytochrome signature 361 380 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 Pfam GAF domain 348 527 IPR003018 GO:0005515(InterPro)
Lac6g0061 1251 SMART HisKA_10 1021 1082 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac6g0061 1251 PANTHER OS08G0260000 PROTEIN 129 1123 - -
Lac6g0061 1251 FunFam Phytochrome 533 664 - -
Lac6g0061 1251 ProSiteProfiles Histidine kinase domain profile. 1028 1247 IPR005467 -
Lac6g0061 1251 SUPERFAMILY GAF domain-like 536 713 - -
Lac6g0061 1251 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1078 1240 IPR036890 -
Lac6g0061 1251 Gene3D - 327 689 IPR029016 -
Lac6g0061 1251 Pfam PAS fold 747 861 IPR013767 GO:0006355(InterPro)
Lac6g0061 1251 Pfam PAS fold 877 999 IPR013767 GO:0006355(InterPro)
Lac6g0061 1251 SMART gaf_1 346 538 IPR003018 GO:0005515(InterPro)
Lac6g0061 1251 Pfam PAS fold 197 313 IPR013654 GO:0006355(InterPro)
Lac6g0061 1251 ProSiteProfiles PAS repeat profile. 744 814 IPR000014 -
Lac6g0061 1251 FunFam Phytochrome 740 871 - -
Lac6g0061 1251 Gene3D PAS domain 202 449 - -
Lac6g0061 1251 SUPERFAMILY PYP-like sensor domain (PAS domain) 891 997 IPR035965 -
Lac6g0061 1251 ProSiteProfiles PAS repeat profile. 877 929 IPR000014 -
Lac6g0061 1251 SUPERFAMILY PYP-like sensor domain (PAS domain) 750 857 IPR035965 -
Lac6g0061 1251 SMART pas_2 876 945 IPR000014 -
Lac6g0061 1251 SMART pas_2 746 812 IPR000014 -
Lac6g0061 1251 Gene3D PAS domain 891 1005 - -
Lac6g0061 1251 SMART HKATPase_4 1133 1245 IPR003594 -
Lac6g0061 1251 Coils Coil 525 545 - -
Lac6g0061 1251 SUPERFAMILY PYP-like sensor domain (PAS domain) 202 314 IPR035965 -
Lac6g0061 1251 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1133 1243 IPR003594 -
Lac6g0061 1251 Gene3D PAS domain 739 876 - -
Lac6g0061 1251 Pfam His Kinase A (phospho-acceptor) domain 1022 1082 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac6g0061 1251 Gene3D - 533 706 IPR043150 -
Lac6g0061 1251 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 346 518 IPR016132 -
Lac6g0061 1251 CDD HATPase_Phy-like 1132 1243 IPR044767 -
Lac6g0061 1251 ProSitePatterns Phytochrome chromophore attachment site signature. 446 455 IPR013516 -
Lac6g0061 1251 CDD PAS 755 861 IPR000014 -
Lac6g0061 1251 NCBIfam PAS domain S-box protein 751 867 IPR000014 -
Lac6g0061 1251 Gene3D - 1058 1239 IPR036890 -
Lac6g0061 1251 Pfam Phytochrome region 541 715 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0061 1251 CDD PAS 888 999 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0396 Lac-Chr12:4469365 Lac6g0061 Lac-Chr6:490572 0.00E+00 dispersed
Lac6g0061 Lac-Chr6:490572 Lac7g0960 Lac-Chr7:8162827 3.00E-227 dispersed
Lac6g0061 Lac-Chr6:490572 Lac6g0064 Lac-Chr6:529084 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0061 K12120 - csv:101208491 2134.76