Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0062 ATGGATCCACCTACTCTGATGGATCCACCTAATGCCAATGCCAATGTGGCGCCCTTCAATCTCTCTGAGATCTGGCAGTTCCCAATTAATGGCGGAACCGCCGTTGAGGAATCTGGAGGTGGACTCGGCTTGAGGATGGCCCAGTTCGCTCATAATTTGGGCCAGTTTGGAGAGATTGCCATGGGGAATCGAGAGGTTTCGCGTGGTGATCCGGTGAGCTTGCAATTGCAGCAGAGAGTAGCTCATGGCCATGGCGGTTCCAAGAAGCGCCGTGATGCTGAGCAAGATTCGGCTAAGGTCAGCTCGACCAGCAATGGCAATGGCAATAGCGGCGGGGCGAATGACTCTGGTGGAAAACGCCTTAAAACAGCAGCATGTAGAGATGATAACCACGAATCTAAAACAGAAGCAGAACCCAGATCTGGCAAGGCCGAGCAGAACTCCCATCCCCCACCAGAACAACCCAAACAGGATTACATTCATGTCCGAGCAAGAAGGGGCCAGGCAACTGATAGCCATAGTTTGGCAGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTTCAGGATTTGGTCCCTGGGTGTAATAAGGTTATTGGAAAAGCACTCGTTCTTGATGAGATAATAAATTACATTCAATCGCTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCCAGAATTAGTCCTGGCATTGAAGTGTTTCCTCCTAAAGATTATGGTCAACAGACATTTGATACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGGTCATCACCAGAATGGCTGCATATGCAGATTGGTGGCGGTTTCGAAAGAACGACGTAG 870 48.16 MDPPTLMDPPNANANVAPFNLSEIWQFPINGGTAVEESGGGLGLRMAQFAHNLGQFGEIAMGNREVSRGDPVSLQLQQRVAHGHGGSKKRRDAEQDSAKVSSTSNGNGNSGGANDSGGKRLKTAACRDDNHESKTEAEPRSGKAEQNSHPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRISPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 510509 512735 + Lag0004031.1 Lac6g0062 609831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0062 289 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 87 244 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac6g0062 289 MobiDBLite consensus disorder prediction 121 143 - -
Lac6g0062 289 Coils Coil 215 235 - -
Lac6g0062 289 MobiDBLite consensus disorder prediction 98 116 - -
Lac6g0062 289 CDD bHLH_AtBPE_like 158 243 - -
Lac6g0062 289 SMART finulus 174 224 IPR011598 GO:0046983(InterPro)
Lac6g0062 289 MobiDBLite consensus disorder prediction 79 156 - -
Lac6g0062 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 236 IPR036638 GO:0046983(InterPro)
Lac6g0062 289 Gene3D - 165 238 IPR036638 GO:0046983(InterPro)
Lac6g0062 289 FunFam Basic helix-loop-helix transcription factor 165 237 - -
Lac6g0062 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 218 IPR011598 GO:0046983(InterPro)
Lac6g0062 289 Pfam Helix-loop-helix DNA-binding domain 172 219 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0654 Lac-Chr3:5080163 Lac6g0062 Lac-Chr6:510509 2.40E-68 dispersed
Lac6g0062 Lac-Chr6:510509 Lac7g1062 Lac-Chr7:9396666 6.70E-34 dispersed
Lac6g0062 Lac-Chr6:510509 Lac4g1456 Lac-Chr4:33028543 1.20E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23952 PF00010 HLH 2.40E-08 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0062 - - - 0.0