Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0064 ATGTCATCAAGTAGACCGAGCCAGTCCACGAACACGGGAGGATCCTCGTCGTCCTCACAATCAAGACACAGCACTCGAATCCTCACTCAAACCTCCATAGACGCAAAGCTCCACTCCCACTTCGAACAATCTGGCTCTTCCTTCGACTACTCCACTTCAGTCCATCTCACAACCAACCCACCGCCGCCAACCACCACCACCACAACCACCGCATACCTCCACCACATCCAAAAATCCAACCTCATCCAACCCTTCGGCTGCCTCTTGGCCCTCCACCCAACCTCCCTCAAGCTCATCGCCTTCAGCCAAAACGCCCCCGAATTCCTCACCTCCGTCACCCACACCGTCCCCACCATCTCCGACCACCCCCTCCTCTCCCTCGGCTCCGACCTCCGCTCCATCTTCACCGCCCCCTCCGCCGCCGCCCTCCTCAAGGCCCTCGCCTTCCCCGACCTCACCCTCCTCAACCCCATTCTCGTCCACTCCAAGTCCTCCGGCAAGCCCTTCTACGCCATCGTCCACCGTGTCACCGCCAGCCTCATCATCGACTTCGAGCCCGTCAAGCCCGATGAAGTCCCGATCACCGCCGCCGGGGCTCTCCAGTCCTACAAGCTCGCAGCCAAAGCCATCACTCGCCTCCAAGCTCTCCCCAGCGGGAGCATGGCCAGGCTCTGTGACACCATGGTCCAAGAGGTCTTCGAGCTGACGGGTTATGACAGGGTCATGGCTTATAGGTTTCACGATGACGATCATGGGGAGGTTTTCTCTGAGGTTACTAAGCCTGGGCTCGAGCCTTATCTGGGTTTGCATTATCCTGCCACTGACATTCCTCAGGCTGCCAGGTTCTTGTTCATGAAGAATAAGGTTAGAATGATTGTGGACTGCAGAGCCAAGCATGTCAAGGTGCTTCAAGATCCAAACCTTGAGTTTGATTTGACTTTGTGTGGCTCCACTTTGAGAGCTCCTCATACTTGCCATTTGCAGTATATGGAGAATATGGATTCTATTGCTTCTTTGGTCATGGCAGTTGTGGTGAATGATCAGGAGGATCAACAGGAATTTGATCATAATACTAATCAGAAACACAAGAGGAAAAGATTGTGGGGTTTGGTGGTTTGTCATAATACAACTCCTAGATTTGTTCCTTTTCCTCTTAGATATGCTTGTGAGTTTCTAGCTCAAGTGTTTGCCATTCATGTGAACAAGGAATTGGAGTTGGAGAGTCAGATTTTGGAGAAGAATATCTTGAGAACTCAAACCCTTTTGTGTGACATGTTGATGCGTGATGCTCCTTTGGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTCAAATCTGATGGGGCTGCATTGTTTTACAAGAATAAGGTATGGAGATTGGGGATAACTCCCAGTGATTTTCACCTTCATGACATTGCTTCATGGATTTTGGAGTATCATATGGATTCCACTGGCTTGAGTACTGATAGCTTGTATGATGCCGGGTACCCCGGCGCGCTTGCCCTAGGCGACGCCGTGTGCGGGATGGCGGCCGTGAGGATAGCCTCCGAAGACATGATCTTCTGGTTCCGATCGCACACCGCGTCGGAGATCCGGTGGGGCGGGGCGAAGCACGAGCCTGGTGAGAAGGATGATGGAAGGAAAATGCATCCCAGGTCATCTTTCAAGGCTTTTCTTGAAGTGGTCAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATCCATTCTTTGCAACTCATCCTAAGGAACACTTACAAAGATACAGATAGTGTGAGTGATCAGATCAATAGAAAATCAATACAATCAACACTCAGTGACCTTAAAATTGATGGGAGGCAAGAACTGGAATCAGTAACAAGTGAGATGGTCAGGCTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTGGATGGTTTGGTTAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTGACAAAGCTATTGGCAAGCATTTGCTCACATTGGTGGAAGATTCTTCTGTAGAAATTGTTAAGAAGATGCTGTTCTTGGCATTGCAAGGCCAAGAAGAGAAAAACGTTCAATTTGAGATAAAAACACACGGCTGTGAGTCTGAGATCGAGTCAGCTGGCTCCATAAGCCTAATAGTAAATGCTTGTGCAAGCAAGGACTTAAGCGAAAACGTAGTGGGAGTTTGCTTTGTAGCACAAGACATAACTCATCAAAAGCTGGTAATGGACAAGTTCACAAAATTACAAGGCGATTACAAAGCCATAGTACAAAACCCCAACCCACTGATCCCTCCAATCTTCGGCCTAGACGAATTCGGCTGGTGCACTGAATGGAACTTAGCAATGACAAAGCTAAGTGGGTTCTCACGTGAACAAGTCCTCAACAAAATGCTCTTAGGAGAGGTTTTTGGCACACAACAAAGGTCCTGTTGCCATCTAAAGAACCAAGAAGCCTTTGTGAATCTTGGCATCGTCTTGAACAATGCCATGAGCGGCCAAGACCCTGAAAAGATTTCGTTTGGCTTCTTTGCCAGAAATGGGATGTTCGTAGAATGTCTTCTGTGTGTCAACAAGATTGTGGATGGAGATGGTGGAGTGATTGGCGTTTTTTGCTTTCTGCAACTCGCCAGCCAAGAGCTTCAACAGGCTTTGAATGTTCAAAGATTGTGTGAGAGAACGGCTTTGAAGAGATTGAAGGCATTGGGATATATCAAGAGGCAGATTCGTAATCCTCTTTGTGGGATTATTTTCTCAAGGAAGATGTTGGAACGAACTCAGCTGGGAGTAGAACAGAAGCAACTTTTGCTTAATAGTTTCAATTGTCAGAAGCAGATCACCAAGGTTCTTGATGAGTCAGATGATCTTGATCACATCATTGAAGGTTTGATTGATTTAGAAATGGTTGAGTTTTCATTATATGAAGTATTGGTGGTATCAATCAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGTAAATGAGGTTGCTGAAGAGATCATGTCTGAGACCTTATATGGAGACAATTTGAGACTTCAACAAGTCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGGCCAACTTTTGCTTACAACCAATTTGACTAAGGATCATTTAGGAAACTCAGTACATCTTGTGCATGTGGACTTCAGGATAACCTATGTAGGTGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGAAATGACGAGGATGCATCCGAAGAAGGTTTTAGCTTACTCATAAGTAGAAAGTTGGTGAAGCTCATGAATGGAGATGTGAGATATGTGAGGGAAGCAGGCAAGTCAAGCTTCATCTTAACTGTTGAGCTTGCTGCAGCAAATAATAATCAAGTTAAGAACAACCTAAGCTAA 3420 46.52 MSSSRPSQSTNTGGSSSSSQSRHSTRILTQTSIDAKLHSHFEQSGSSFDYSTSVHLTTNPPPPTTTTTTTAYLHHIQKSNLIQPFGCLLALHPTSLKLIAFSQNAPEFLTSVTHTVPTISDHPLLSLGSDLRSIFTAPSAAALLKALAFPDLTLLNPILVHSKSSGKPFYAIVHRVTASLIIDFEPVKPDEVPITAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVLQDPNLEFDLTLCGSTLRAPHTCHLQYMENMDSIASLVMAVVVNDQEDQQEFDHNTNQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALFYKNKVWRLGITPSDFHLHDIASWILEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAAVRIASEDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDTDSVSDQINRKSIQSTLSDLKIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVDKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKNVQFEIKTHGCESEIESAGSISLIVNACASKDLSENVVGVCFVAQDITHQKLVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCTEWNLAMTKLSGFSREQVLNKMLLGEVFGTQQRSCCHLKNQEAFVNLGIVLNNAMSGQDPEKISFGFFARNGMFVECLLCVNKIVDGDGGVIGVFCFLQLASQELQQALNVQRLCERTALKRLKALGYIKRQIRNPLCGIIFSRKMLERTQLGVEQKQLLLNSFNCQKQITKVLDESDDLDHIIEGLIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIVNEVAEEIMSETLYGDNLRLQQVMADFLLISVNYAPTGGQLLLTTNLTKDHLGNSVHLVHVDFRITYVGGGIPESLLNEMFGNDEDASEEGFSLLISRKLVKLMNGDVRYVREAGKSSFILTVELAAANNNQVKNNLS 1139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 529084 533790 + Lag0004033.1 Lac6g0064 609833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0064 1139 CDD PAS 633 742 IPR000014 -
Lac6g0064 1139 SMART HKATPase_4 1016 1128 IPR003594 -
Lac6g0064 1139 NCBIfam PAS domain S-box protein 629 746 IPR000014 -
Lac6g0064 1139 Coils Coil 401 421 - -
Lac6g0064 1139 PRINTS Phytochrome signature 320 341 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 552 570 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 519 538 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 740 760 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 135 157 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 720 737 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 235 254 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 434 454 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 FunFam Phytochrome 618 752 - -
Lac6g0064 1139 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 966 1123 IPR036890 -
Lac6g0064 1139 SUPERFAMILY GAF domain-like 200 401 - -
Lac6g0064 1139 FunFam Phytochrome 409 540 - -
Lac6g0064 1139 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 220 394 IPR016132 -
Lac6g0064 1139 Gene3D PAS domain 618 756 - -
Lac6g0064 1139 CDD PAS 769 881 IPR000014 -
Lac6g0064 1139 Gene3D - 201 565 IPR029016 -
Lac6g0064 1139 Gene3D - 948 1121 IPR036890 -
Lac6g0064 1139 Pfam Phytochrome region 417 590 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 ProSitePatterns Phytochrome chromophore attachment site signature. 320 329 IPR013516 -
Lac6g0064 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 736 IPR035965 -
Lac6g0064 1139 MobiDBLite consensus disorder prediction 1 25 - -
Lac6g0064 1139 Pfam PAS fold 71 187 IPR013654 GO:0006355(InterPro)
Lac6g0064 1139 SUPERFAMILY GAF domain-like 412 589 - -
Lac6g0064 1139 PIRSF Phytochrome_conventional 2 1135 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Lac6g0064 1139 PANTHER OS08G0260000 PROTEIN 1 1005 - -
Lac6g0064 1139 SMART pas_2 624 690 IPR000014 -
Lac6g0064 1139 SMART pas_2 757 827 IPR000014 -
Lac6g0064 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 772 879 IPR035965 -
Lac6g0064 1139 ProSiteProfiles PAS repeat profile. 758 810 IPR000014 -
Lac6g0064 1139 SMART gaf_1 220 414 IPR003018 GO:0005515(InterPro)
Lac6g0064 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 76 190 IPR035965 -
Lac6g0064 1139 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1016 1126 IPR003594 -
Lac6g0064 1139 Gene3D - 409 582 IPR043150 -
Lac6g0064 1139 Gene3D PAS domain 771 888 - -
Lac6g0064 1139 Pfam GAF domain 222 403 IPR003018 GO:0005515(InterPro)
Lac6g0064 1139 ProSiteProfiles PAS repeat profile. 622 692 IPR000014 -
Lac6g0064 1139 Pfam PAS fold 758 881 IPR013767 GO:0006355(InterPro)
Lac6g0064 1139 Pfam PAS fold 625 742 IPR013767 GO:0006355(InterPro)
Lac6g0064 1139 Gene3D PAS domain 75 323 - -
Lac6g0064 1139 ProSiteProfiles Histidine kinase domain profile. 910 1130 IPR005467 -
Lac6g0064 1139 SMART HisKA_10 903 978 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0064 K12120 - - csv:101219585 1895.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0064 Lac-Chr6:529084 Lac7g0960 Lac-Chr7:8162827 2.10E-216 dispersed
Lac6g0061 Lac-Chr6:490572 Lac6g0064 Lac-Chr6:529084 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g0101 . 30 1213 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1446.8
Lac13g1678 . 28 1013 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.2
Lac8g2211 . 23 959 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1322.4
Lac4g1833 . 79 1023 Histidine Kinase Gene Family AT2G01830 53.6 3.7e-279 958.7
Lac12g0372 . 1068 2020 Histidine Kinase Gene Family AT2G01830 53.5 1.3e-276 950.3
Lac9g1967 . 283 1238 Histidine Kinase Gene Family AT2G01830 52.4 7.7e-269 924.5
Lac2g0516 . 1 984 Histidine Kinase Gene Family AT5G10720 57.9 5.5e-287 984.6
Lac6g0061 . 129 1248 Histidine Kinase Gene Family AT1G09570 80.7 0.0e+00 1842.8
Lac6g0064 . 1 1130 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lac12g0396 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1230.3
Lac7g0960 . 27 666 Histidine Kinase Gene Family AT1G09570 60.4 1.7e-229 793.9
Lac10g1014 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.2 0.0e+00 1258.4
Lac6g0061 . 149 1182 Histidine Kinase Gene Family AT2G18790 53.7 0.0e+00 1094.7
Lac7g0960 . 13 666 Histidine Kinase Gene Family AT2G18790 84.2 0.0e+00 1094.0
Lac12g0396 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 7.9e-314 1073.9
Lac6g0064 . 7 1065 Histidine Kinase Gene Family AT2G18790 51.5 1.7e-311 1066.2
Lac7g0961 . 45 414 Histidine Kinase Gene Family AT2G18790 70.0 3.2e-156 550.4
Lac12g0396 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.2 0.0e+00 1382.9
Lac6g0061 . 137 1242 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1119.0
Lac7g0960 . 21 668 Histidine Kinase Gene Family AT5G35840 58.7 9.3e-225 778.1
Lac10g1014 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1300.0
Lac6g0061 . 136 1243 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1140.6
Lac12g0396 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1115.5
Lac6g0064 . 8 1126 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1089.7
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G16250 79.6 7.1e-308 1054.3
Lac7g0961 . 45 475 Histidine Kinase Gene Family AT4G16250 71.0 6.0e-182 636.0
Lac10g1014 . 15 1113 Histidine Kinase Gene Family AT4G18130 64.0 0.0e+00 1404.0
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G18130 63.2 1.5e-235 813.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56