Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0064 ATGTCATCAAGTAGACCGAGCCAGTCCACGAACACGGGAGGATCCTCGTCGTCCTCACAATCAAGACACAGCACTCGAATCCTCACTCAAACCTCCATAGACGCAAAGCTCCACTCCCACTTCGAACAATCTGGCTCTTCCTTCGACTACTCCACTTCAGTCCATCTCACAACCAACCCACCGCCGCCAACCACCACCACCACAACCACCGCATACCTCCACCACATCCAAAAATCCAACCTCATCCAACCCTTCGGCTGCCTCTTGGCCCTCCACCCAACCTCCCTCAAGCTCATCGCCTTCAGCCAAAACGCCCCCGAATTCCTCACCTCCGTCACCCACACCGTCCCCACCATCTCCGACCACCCCCTCCTCTCCCTCGGCTCCGACCTCCGCTCCATCTTCACCGCCCCCTCCGCCGCCGCCCTCCTCAAGGCCCTCGCCTTCCCCGACCTCACCCTCCTCAACCCCATTCTCGTCCACTCCAAGTCCTCCGGCAAGCCCTTCTACGCCATCGTCCACCGTGTCACCGCCAGCCTCATCATCGACTTCGAGCCCGTCAAGCCCGATGAAGTCCCGATCACCGCCGCCGGGGCTCTCCAGTCCTACAAGCTCGCAGCCAAAGCCATCACTCGCCTCCAAGCTCTCCCCAGCGGGAGCATGGCCAGGCTCTGTGACACCATGGTCCAAGAGGTCTTCGAGCTGACGGGTTATGACAGGGTCATGGCTTATAGGTTTCACGATGACGATCATGGGGAGGTTTTCTCTGAGGTTACTAAGCCTGGGCTCGAGCCTTATCTGGGTTTGCATTATCCTGCCACTGACATTCCTCAGGCTGCCAGGTTCTTGTTCATGAAGAATAAGGTTAGAATGATTGTGGACTGCAGAGCCAAGCATGTCAAGGTGCTTCAAGATCCAAACCTTGAGTTTGATTTGACTTTGTGTGGCTCCACTTTGAGAGCTCCTCATACTTGCCATTTGCAGTATATGGAGAATATGGATTCTATTGCTTCTTTGGTCATGGCAGTTGTGGTGAATGATCAGGAGGATCAACAGGAATTTGATCATAATACTAATCAGAAACACAAGAGGAAAAGATTGTGGGGTTTGGTGGTTTGTCATAATACAACTCCTAGATTTGTTCCTTTTCCTCTTAGATATGCTTGTGAGTTTCTAGCTCAAGTGTTTGCCATTCATGTGAACAAGGAATTGGAGTTGGAGAGTCAGATTTTGGAGAAGAATATCTTGAGAACTCAAACCCTTTTGTGTGACATGTTGATGCGTGATGCTCCTTTGGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTCAAATCTGATGGGGCTGCATTGTTTTACAAGAATAAGGTATGGAGATTGGGGATAACTCCCAGTGATTTTCACCTTCATGACATTGCTTCATGGATTTTGGAGTATCATATGGATTCCACTGGCTTGAGTACTGATAGCTTGTATGATGCCGGGTACCCCGGCGCGCTTGCCCTAGGCGACGCCGTGTGCGGGATGGCGGCCGTGAGGATAGCCTCCGAAGACATGATCTTCTGGTTCCGATCGCACACCGCGTCGGAGATCCGGTGGGGCGGGGCGAAGCACGAGCCTGGTGAGAAGGATGATGGAAGGAAAATGCATCCCAGGTCATCTTTCAAGGCTTTTCTTGAAGTGGTCAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATCCATTCTTTGCAACTCATCCTAAGGAACACTTACAAAGATACAGATAGTGTGAGTGATCAGATCAATAGAAAATCAATACAATCAACACTCAGTGACCTTAAAATTGATGGGAGGCAAGAACTGGAATCAGTAACAAGTGAGATGGTCAGGCTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTGGATGGTTTGGTTAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTGACAAAGCTATTGGCAAGCATTTGCTCACATTGGTGGAAGATTCTTCTGTAGAAATTGTTAAGAAGATGCTGTTCTTGGCATTGCAAGGCCAAGAAGAGAAAAACGTTCAATTTGAGATAAAAACACACGGCTGTGAGTCTGAGATCGAGTCAGCTGGCTCCATAAGCCTAATAGTAAATGCTTGTGCAAGCAAGGACTTAAGCGAAAACGTAGTGGGAGTTTGCTTTGTAGCACAAGACATAACTCATCAAAAGCTGGTAATGGACAAGTTCACAAAATTACAAGGCGATTACAAAGCCATAGTACAAAACCCCAACCCACTGATCCCTCCAATCTTCGGCCTAGACGAATTCGGCTGGTGCACTGAATGGAACTTAGCAATGACAAAGCTAAGTGGGTTCTCACGTGAACAAGTCCTCAACAAAATGCTCTTAGGAGAGGTTTTTGGCACACAACAAAGGTCCTGTTGCCATCTAAAGAACCAAGAAGCCTTTGTGAATCTTGGCATCGTCTTGAACAATGCCATGAGCGGCCAAGACCCTGAAAAGATTTCGTTTGGCTTCTTTGCCAGAAATGGGATGTTCGTAGAATGTCTTCTGTGTGTCAACAAGATTGTGGATGGAGATGGTGGAGTGATTGGCGTTTTTTGCTTTCTGCAACTCGCCAGCCAAGAGCTTCAACAGGCTTTGAATGTTCAAAGATTGTGTGAGAGAACGGCTTTGAAGAGATTGAAGGCATTGGGATATATCAAGAGGCAGATTCGTAATCCTCTTTGTGGGATTATTTTCTCAAGGAAGATGTTGGAACGAACTCAGCTGGGAGTAGAACAGAAGCAACTTTTGCTTAATAGTTTCAATTGTCAGAAGCAGATCACCAAGGTTCTTGATGAGTCAGATGATCTTGATCACATCATTGAAGGTTTGATTGATTTAGAAATGGTTGAGTTTTCATTATATGAAGTATTGGTGGTATCAATCAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGTAAATGAGGTTGCTGAAGAGATCATGTCTGAGACCTTATATGGAGACAATTTGAGACTTCAACAAGTCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGGCCAACTTTTGCTTACAACCAATTTGACTAAGGATCATTTAGGAAACTCAGTACATCTTGTGCATGTGGACTTCAGGATAACCTATGTAGGTGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGAAATGACGAGGATGCATCCGAAGAAGGTTTTAGCTTACTCATAAGTAGAAAGTTGGTGAAGCTCATGAATGGAGATGTGAGATATGTGAGGGAAGCAGGCAAGTCAAGCTTCATCTTAACTGTTGAGCTTGCTGCAGCAAATAATAATCAAGTTAAGAACAACCTAAGCTAA 3420 46.52 MSSSRPSQSTNTGGSSSSSQSRHSTRILTQTSIDAKLHSHFEQSGSSFDYSTSVHLTTNPPPPTTTTTTTAYLHHIQKSNLIQPFGCLLALHPTSLKLIAFSQNAPEFLTSVTHTVPTISDHPLLSLGSDLRSIFTAPSAAALLKALAFPDLTLLNPILVHSKSSGKPFYAIVHRVTASLIIDFEPVKPDEVPITAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVLQDPNLEFDLTLCGSTLRAPHTCHLQYMENMDSIASLVMAVVVNDQEDQQEFDHNTNQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALFYKNKVWRLGITPSDFHLHDIASWILEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAAVRIASEDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDTDSVSDQINRKSIQSTLSDLKIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVDKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKNVQFEIKTHGCESEIESAGSISLIVNACASKDLSENVVGVCFVAQDITHQKLVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCTEWNLAMTKLSGFSREQVLNKMLLGEVFGTQQRSCCHLKNQEAFVNLGIVLNNAMSGQDPEKISFGFFARNGMFVECLLCVNKIVDGDGGVIGVFCFLQLASQELQQALNVQRLCERTALKRLKALGYIKRQIRNPLCGIIFSRKMLERTQLGVEQKQLLLNSFNCQKQITKVLDESDDLDHIIEGLIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIVNEVAEEIMSETLYGDNLRLQQVMADFLLISVNYAPTGGQLLLTTNLTKDHLGNSVHLVHVDFRITYVGGGIPESLLNEMFGNDEDASEEGFSLLISRKLVKLMNGDVRYVREAGKSSFILTVELAAANNNQVKNNLS 1139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 529084 533790 + Lag0004033.1 Lac6g0064 609833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0064 1139 CDD PAS 633 742 IPR000014 -
Lac6g0064 1139 SMART HKATPase_4 1016 1128 IPR003594 -
Lac6g0064 1139 NCBIfam PAS domain S-box protein 629 746 IPR000014 -
Lac6g0064 1139 Coils Coil 401 421 - -
Lac6g0064 1139 PRINTS Phytochrome signature 320 341 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 552 570 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 519 538 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 740 760 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 135 157 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 720 737 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 235 254 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 434 454 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 FunFam Phytochrome 618 752 - -
Lac6g0064 1139 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 966 1123 IPR036890 -
Lac6g0064 1139 SUPERFAMILY GAF domain-like 200 401 - -
Lac6g0064 1139 FunFam Phytochrome 409 540 - -
Lac6g0064 1139 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 220 394 IPR016132 -
Lac6g0064 1139 Gene3D PAS domain 618 756 - -
Lac6g0064 1139 CDD PAS 769 881 IPR000014 -
Lac6g0064 1139 Gene3D - 201 565 IPR029016 -
Lac6g0064 1139 Gene3D - 948 1121 IPR036890 -
Lac6g0064 1139 Pfam Phytochrome region 417 590 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac6g0064 1139 ProSitePatterns Phytochrome chromophore attachment site signature. 320 329 IPR013516 -
Lac6g0064 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 736 IPR035965 -
Lac6g0064 1139 MobiDBLite consensus disorder prediction 1 25 - -
Lac6g0064 1139 Pfam PAS fold 71 187 IPR013654 GO:0006355(InterPro)
Lac6g0064 1139 SUPERFAMILY GAF domain-like 412 589 - -
Lac6g0064 1139 PIRSF Phytochrome_conventional 2 1135 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Lac6g0064 1139 PANTHER OS08G0260000 PROTEIN 1 1005 - -
Lac6g0064 1139 SMART pas_2 624 690 IPR000014 -
Lac6g0064 1139 SMART pas_2 757 827 IPR000014 -
Lac6g0064 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 772 879 IPR035965 -
Lac6g0064 1139 ProSiteProfiles PAS repeat profile. 758 810 IPR000014 -
Lac6g0064 1139 SMART gaf_1 220 414 IPR003018 GO:0005515(InterPro)
Lac6g0064 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 76 190 IPR035965 -
Lac6g0064 1139 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1016 1126 IPR003594 -
Lac6g0064 1139 Gene3D - 409 582 IPR043150 -
Lac6g0064 1139 Gene3D PAS domain 771 888 - -
Lac6g0064 1139 Pfam GAF domain 222 403 IPR003018 GO:0005515(InterPro)
Lac6g0064 1139 ProSiteProfiles PAS repeat profile. 622 692 IPR000014 -
Lac6g0064 1139 Pfam PAS fold 758 881 IPR013767 GO:0006355(InterPro)
Lac6g0064 1139 Pfam PAS fold 625 742 IPR013767 GO:0006355(InterPro)
Lac6g0064 1139 Gene3D PAS domain 75 323 - -
Lac6g0064 1139 ProSiteProfiles Histidine kinase domain profile. 910 1130 IPR005467 -
Lac6g0064 1139 SMART HisKA_10 903 978 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0064 Lac-Chr6:529084 Lac7g0960 Lac-Chr7:8162827 2.10E-216 dispersed
Lac6g0061 Lac-Chr6:490572 Lac6g0064 Lac-Chr6:529084 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0064 K12120 - csv:101219585 1895.55