Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0075 | ATGTCGGGATCTGAGGCTGGTGTGATGACGAGTAGAGAACCTTTCAGCGTCGGCGTTCAGAATAGCTCCTTACAGTCGCAGGCGGCGGCTCAAAATATGCGATTAACCTTCAGCGCCGATGGCACAGCCGTGTACAAGCCTGTAACTCCTTCAACGTCCCCGTCCTACCAATCCTCCATGGCCGGAGTTTCCGGTAACGCCGGAATTGAGGGATCGGCTGGTGGGGGCTCTATGTTGCCTCATGGGTTCAACATAAATTCGGTGGGCAGTGAGCAAATAAAGAGAAAGAGGGGCAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCACTAGCTTTAGGTTCTGGGCCGCCATCAGGAAGTGGAGGTTTTTCTCCTTCATCAACTATGGCTAATCCTGCTTCAGAAGGATTGGCCTCACCAAATTCATTGAAGAAAATTAAAGGCAGGCCACCTGGTTCTAAGAAAAAACAACAATTGGAAGCTTTGGGATCGGCTGGTATTGGATTCACACCACATGTTATCGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGGGCTATTTGTATCCTCTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGGCGGTTTGAAATTTTGTCACTTTCTGGTTCATTTCTGCTGTCTGAAAATGGTGGTCAAAGAAGCAGAACTGGTGGTTTGAGCGTGTCTTTGTCCGGCCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCAGGTCTTCTCACGGCTGCATCTCCTGTTCAGGTGGTCGTTGGAAGCTTCATAGTCGACAGCAACAAGGAACCAAAGTCAGTCCGCCGAACCGAACCCCTCGCTGCCTCGACAATGCTAAACCCAGTAAGCTTTGGTCACTTGACAGGAGGAGCTAGTAGTCCATCTCATGGGACGCTGAGCGAGTCTTCCGGTGGTGGCAGCCCTATTAACAACAGCTCCGGAGCCTGCAACAACAGCAACCATCCACAGGGCATGTCTGGCATGCCATGGAAGTAA | 1083 | 50.32 | MSGSEAGVMTSREPFSVGVQNSSLQSQAAAQNMRLTFSADGTAVYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGSGGFSPSSTMANPASEGLASPNSLKKIKGRPPGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIVDSNKEPKSVRRTEPLAASTMLNPVSFGHLTGGASSPSHGTLSESSGGGSPINNSSGACNNSNHPQGMSGMPWK | 360 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 678997 | 681783 | + | Lag0004044.1 | Lac6g0075 | 609844 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0075 | 360 | Gene3D | - | 172 | 308 | - | - | |
| Lac6g0075 | 360 | MobiDBLite | consensus disorder prediction | 120 | 139 | - | - | |
| Lac6g0075 | 360 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 170 | 286 | - | - | |
| Lac6g0075 | 360 | MobiDBLite | consensus disorder prediction | 72 | 159 | - | - | |
| Lac6g0075 | 360 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 172 | 285 | IPR005175 | - | |
| Lac6g0075 | 360 | MobiDBLite | consensus disorder prediction | 314 | 354 | - | - | |
| Lac6g0075 | 360 | ProSiteProfiles | PPC domain profile profile. | 166 | 306 | IPR005175 | - | |
| Lac6g0075 | 360 | MobiDBLite | consensus disorder prediction | 314 | 360 | - | - | |
| Lac6g0075 | 360 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 26 | 339 | IPR039605 | GO:0003680(InterPro) | |
| Lac6g0075 | 360 | CDD | DUF296 | 171 | 285 | IPR005175 | - | |
| Lac6g0075 | 360 | FunFam | AT-hook motif nuclear-localized protein 1-like | 172 | 302 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2406 | Lac-Chr11:40332149 | Lac6g0075 | Lac-Chr6:678997 | 1.50E-59 | dispersed | |
| Lac5g0266 | Lac-Chr5:2586880 | Lac6g0075 | Lac-Chr6:678997 | 2.80E-56 | dispersed | |
| Lac6g0075 | Lac-Chr6:678997 | Lac7g0322 | Lac-Chr7:2496090 | 1.40E-57 | dispersed | |
| Lac11g2099 | Lac-Chr11:36906405 | Lac6g0075 | Lac-Chr6:678997 | 1.80E-53 | transposed | |
| Lac12g1743 | Lac-Chr12:33386702 | Lac6g0075 | Lac-Chr6:678997 | 7.20E-64 | transposed | |
| Lac2g0053 | Lac-Chr2:418593 | Lac6g0075 | Lac-Chr6:678997 | 1.00E-105 | wgd |
Pathway information