Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0084 ATGTGCTTGCTCTTACCTTCTCGTGATCACGATTCAGTCGCAGCCATTGCAGGTTTGGTTTTCGGTTCGTTTTGTTCGATTCTGGCATGTTATTTAGATGTTCTTGCTGTTGTTCGGATTGAGATGGCGGACAGTTGGGATGGAAGTTATGACGACTCTGGAAGCGTATCGGATGAGAGCAATTTTCATGCCAGACTGCATATTGAGCCTATTTATGATTCGTTTGTGTGCCCTTTAACGAAGCAAGTAATGCGGGATCCTGTTACTATTGAAAGTGGCCAAACTTTTGAACGTGCGGCCATTGAAAAGTGGTTCAAGGAATGCAGGGAGAGTAGAAGGAGGCCAATCTGTCCATTAACGCTAAAAGAATTAAAAAGCACGGATCTGAATCCCAGTATTGCTCTGCGGAATACTATCGAAGAGTGGACTGCTAGGAATGAAGCTGTTCAGCTAGATATGGCTCGTAAATCACTTAACTTGGGAAGTCCAGAAAGTGAAACTCTCGGATCTTTGAAGTATGTCCAGCACGTCTGCCAAAAGGGTTTATCAAGGCACATCGCACGAAATGCTGGCCTAATACCCATGATCGTTAGCTTGTTAAAGAGCACCAGCCGGAGAGTCCAGTTTAGAGCTTTGGAAACCCTTCGAATTGTGGTACAAGAAGACAATGAGTGTAAGGAAATGTTAGCTGAGGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGTCATGAGCGTTCAAAAGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCTGAAGCCTTGTGTGAAAATATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGTAGCAAATCTGAGAACATTTCCACAATTGAAAATGCTGATAAAACATTAGAGAACCTGGAGAAGTCTGAGAATAATATTCGACAAATGGCTCAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTCAAGGCTCACCAGAAACTAAACAGTCCATGGCTGCATATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCATCTCTAATTAATATCATGAAAGGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCTTTTGAGGCTAGTGCAAAAGTTTTGGTACAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACTGTTGGTTCAAATGTACTTCCCATGCGATTAAAAGAAGTATCTGCAACAATTCTTGCGAATGTTGTGAGCTCAGGCTGTGATTTCGATTCCATTCCAGTGGAACCTAATAATCAAACTACACTTGTCTCTGAAGATACTGTCCATAACTTGCTACAACTCATTAGTAATACCGGTCCAGCTATTGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTTCTTCAACCATTATGAGTATTGTCAAAGCCATTCGAAGCTCTGGAGCAATTATCAGCTTGGTTCAGTTTATTGAGGCCCCACAGCTGGACTTGCGTGTTTCTGCTATAAAGCTCTTGCGGAACATCTCCCCACACTTAAGCCAGGAGATAGCAGATGCTTTACGTGGCTCAGTTGGCCAGCTGGGCAGTTTATTTAGAATTATAGCAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAAGGGATTTAGGCCTCTCAAGGCAGATGCTTGATGAAGAAGCTTTTGAGTTGGTCTACTTTAGAGTCGTTAGACTCCGCCAAGGGGAGACTAGGGGCAGCCGATTTTTAACACCATTCCTTGAAGGCCTTGTTCAAATTCTTGCGAGGATTACATTTATATTGGCTGATGAGCCTGATGCTCTTGCATTTTGTCGCAACAACAATCTTGCTGCTTTATTCATCGATCTGCTCCAGGCTAATGGACTTGACAATGTGCAGATGGTTTCAGCCATGGCATTGGAAAATTTATCTCTAGAATCCAAAACTTTAACTCAGTTACCTGTGGTTCCGGAACCTGGATTTTGTGCCTCAATTTTTCCATGCTTCAGCAACCAACCAGTACTAATAGGGCAGTGTCCTCTCCACCGAGGTACGTGCTCTTTGAGGGAAAGTTTTTGTCTTTTGGATGGTCAGGCAGTGACCAGATTGGTAGCCCTTTTAGATCACACAAGTGAGAAGGTGGTCGAGGCAGCACTTGCAGCACTGTCTACTCTGTTGGATGATGGAGTTGATGTTGAGCAGGGGGTGAACATTCTGCGTGACGCGGATGGGATTCAGCCTATCTTTAATGTGTTGCTTGAAAACCGTACAGAGAATCTGATGAGAAGGGCCGTTTGGATAGTCGAGAGGCTGTTGCGCACGGAGAACATCGCAATCGAGTTCTCGAATAATCCAAATGTGAGTACAGCGCTTGTTGATGCCTTCCAGCATGGTGACTACCAAACCAGGCAAATTGCTGAGCGTGCTTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTAATAATATGGGATAA 2577 43.58 MCLLLPSRDHDSVAAIAGLVFGSFCSILACYLDVLAVVRIEMADSWDGSYDDSGSVSDESNFHARLHIEPIYDSFVCPLTKQVMRDPVTIESGQTFERAAIEKWFKECRESRRRPICPLTLKELKSTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPESETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRRVQFRALETLRIVVQEDNECKEMLAEGDTLHTVVKFLRHERSKEKEEAVALLYELSKSEALCENIGSVNGAILILVGMSSSKSENISTIENADKTLENLEKSENNIRQMAQYGRLRPLLTQILQGSPETKQSMAAYLGELVLNNDVKLFVAQTVGSSLINIMKGGDKQSKEAALKALNQISSFEASAKVLVQEGILPPLVKDLFTVGSNVLPMRLKEVSATILANVVSSGCDFDSIPVEPNNQTTLVSEDTVHNLLQLISNTGPAIECKLLQVLVGLTSSSSTIMSIVKAIRSSGAIISLVQFIEAPQLDLRVSAIKLLRNISPHLSQEIADALRGSVGQLGSLFRIIAENTGITEEQAAAVGLLADLPERDLGLSRQMLDEEAFELVYFRVVRLRQGETRGSRFLTPFLEGLVQILARITFILADEPDALAFCRNNNLAALFIDLLQANGLDNVQMVSAMALENLSLESKTLTQLPVVPEPGFCASIFPCFSNQPVLIGQCPLHRGTCSLRESFCLLDGQAVTRLVALLDHTSEKVVEAALAALSTLLDDGVDVEQGVNILRDADGIQPIFNVLLENRTENLMRRAVWIVERLLRTENIAIEFSNNPNVSTALVDAFQHGDYQTRQIAERALRHVDKLPNFSNIFPNPNNMG 858
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 734020 741564 - Lag0004053.1 Lac6g0084 609853
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0084 858 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 157 IPR013083 -
Lac6g0084 858 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 57 851 IPR052608 -
Lac6g0084 858 SUPERFAMILY ARM repeat 172 486 IPR016024 -
Lac6g0084 858 Coils Coil 294 314 - -
Lac6g0084 858 Gene3D - 356 529 IPR011989 -
Lac6g0084 858 Pfam U-box domain 73 147 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac6g0084 858 SMART arm_5 222 262 IPR000225 GO:0005515(InterPro)
Lac6g0084 858 SMART arm_5 348 387 IPR000225 GO:0005515(InterPro)
Lac6g0084 858 SMART arm_5 489 529 IPR000225 GO:0005515(InterPro)
Lac6g0084 858 SMART arm_5 631 673 IPR000225 GO:0005515(InterPro)
Lac6g0084 858 SMART arm_5 180 220 IPR000225 GO:0005515(InterPro)
Lac6g0084 858 SMART arm_5 714 755 IPR000225 GO:0005515(InterPro)
Lac6g0084 858 SMART arm_5 306 347 IPR000225 GO:0005515(InterPro)
Lac6g0084 858 SMART arm_5 759 801 IPR000225 GO:0005515(InterPro)
Lac6g0084 858 SMART arm_5 388 433 IPR000225 GO:0005515(InterPro)
Lac6g0084 858 SUPERFAMILY RING/U-box 63 152 - -
Lac6g0084 858 Gene3D - 166 355 IPR011989 -
Lac6g0084 858 Gene3D - 616 849 IPR011989 -
Lac6g0084 858 SUPERFAMILY ARM repeat 444 841 IPR016024 -
Lac6g0084 858 SMART Ubox_2 74 142 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac6g0084 858 CDD RING-Ubox_PUB 72 129 IPR045210 -
Lac6g0084 858 ProSiteProfiles U-box domain profile. 70 149 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0414 Lac-Chr13:2909812 Lac6g0084 Lac-Chr6:734020 2.90E-116 dispersed
Lac3g1287 Lac-Chr3:11107747 Lac6g0084 Lac-Chr6:734020 5.90E-12 dispersed
Lac6g0084 Lac-Chr6:734020 Lac9g1894 Lac-Chr9:38710060 6.70E-13 dispersed
Lac6g0084 Lac-Chr6:734020 Lac7g2706 Lac-Chr7:46146918 8.50E-16 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0084 - - - 0.0