Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0142 | ATGAGCCTGCGCAAGGGCTCTAAGGTCTGGGTGGAAGACAGAGATTTTGCTTGGGTAGCAGCTGAAGTCCTCGACTTCGTTGGTAAACAAGTTCAAGTTGCAACTGTAAATGGAAAGAAGGTCTTGGCTCTTCCTGAGAAGCTTCTGGCGAGGGACGCGGATGAGGATGACCATGGAGGGGTGGATGACATGACGAAGTTGACCTATTTGAATGAGCCAGGGGTGCTTTATAATCTTCAAAGAAGATATTCTCTCAATGACATATATACATACACTGGTAGCATTTTGATTGCCGTCAATCCATTCACCAAGCTTCCCCATCTGTACGATGTTCACATGATGGAGATGTACAAGGGAGCACCTTTTGGGGAATTGAGCCCTCATGTTTTTGCAGTTGCTGATGCTTCATATAGAGCAATGATTAGTGAAGGTCGAAGCCAGTCTATATTGGTCAGTGGAGAGAGTGGGGCAGGGAAAACCGAGACAACGAAATTGATTATGCAGTACCTTACATTTGTTGGAGGTCGAGCGTTAGGCAATGACAGAACTGTTGAGCAACAAGTTCTTGAATCAAATCCTTTACTGGAAGCATTTGGTAATGCAAGGACGGTTAGAAATGATAATTCAAGTCGTTTTGGGAAGTTTGTTGAGATCCAGTTTGATGCAAATGGTAGAATATCAGGTGCTGCAATTAGAACTTATCTTCTAGAACGTTCTCGTGTTGTACAAATCACAAACCCCGAGAGGAACTATCATTGTTTTTATCAGCTATGTGCATCTGGACGGGATGCAGAGAAGTACAAGTTAGACCACCCAAGTCATTTTCGATATTTAAATCAAAGCCAGACCTATGATTTAGATGGAGTGAGCAATGCTGAGGAGTATATTAGGACAAGGAGGGCAATGGATATTGTTGGTATCAATCATGAGGATCAGGAAGCTATCTTTCGTACCTTGGCTGCAATTTTGCATCTAGGGAATGTTGAGTTTTCTCCTGGAAAAGAACACGACTCTTCAGTCTTGAAGGATGAAAAGTCTACCTTTCATTTAGGAGTGGCTTCTAATCTTCTGATGTGTGATTCCAACCTCTTGGTCTCAGCCCTTTGTACTCGTTCAATTCAAACTCGTGAAGGAATTATCGTTAAAGCACTAGACTGTGAAGGTGCTGTTACTAGTCGGGATGCATTGGCAAAGACTGTTTATGCTCGTCTTTTTGATTGGCTTGTCGATAAGATTAACCAGTCTGTCGGGCAAGATTTGAATTCTCAATTTCAAATTGGGTTATTGGACATTTATGGTTTCGAATGCTTTAAGGACAATAGTTTTGAGCAGTTTTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTGTTTAAGATGGAGCAAGAGGAGTATAGCAAAGAGGAAATAAATTGGAGCTACATTGAATTCATTGACAATCAGGATGTGTTGGATTTGATCGAGAAGAAACCTATTGGGATCATTGGTTTGCTGGATGAGGCTTGTATGTTCCCAAGATCAACTCATGAAACATTCTCAACCAAATTATTTCAGAATTTTCGTACTCATCCAAGGTTGGAAAGAACAAAATTTTCAGAAACAGATTTCACTCTGTCCCATTATGCTGGAAAGGTCACTTATCATACAGATACTTTTTTAGATAAAAATCGTGATTATGTTGTGGTCGAGCATTGCAATCTATTGGCTTCTTCTAGATGCACTTTTGTTGCTGGCCTTTTCTCTTCCTTACCGGAGGAATCTTCAAGATCATCATATAAATTTTCTTCTGTAGCTTCAAGATTTAAGCAACAACTTCAAGCACTCATGGAGACACTGAATTCAACTGAGCCCCATTATGTACGCTGTGTGAAGCCAAACTCTCTTAATAGGCCCCAGAAGTTTGAGAATCTAAGCATTCTGCATCAATTACGTTGTGGGGGTGTTTTGGAGGCTGTTCGAATAAGTCTTGCAGGTTATCCCACCAGAAGAACTTACACAGAATTTATTGATCGTTTTGGTTTGTTGGCTCCTGATTTATTGGATGGAAGCTATGATGAACGATTGATTACAGAAAAGATTCTACAAAAGTTGAAGCTCAAAAATTTTCAGTTGGGTAGGACCAAAGTATTTCTTAGGGCTGGTCAAATTGGCATTCTGGATGCTCGAAGAGCTGAAGTATTAGATAATGCTGCGAAGTGTATACAACGTCGATTACGAACATATCATGCGCGCAAGGATTTTCTATTGATGCGTTCTACTGCAATTGCACTCCAAGCATATTGCAGAGGATGCCTTGCCCGAAAGTTTTATGTAGCAAAACGGGAAAGTACTGCTGCCACTACAATACAAAAATATATTCGCAGGTGGTTCTTCAGGAATACTTATTTGGTGCTCTGTTCAGCTACTTTAACCATACAGTCCAGTATTCGTGGTTTTGCAACTCGCAATAGGTTTTTGCATGATAGAAGAAATAAAGCTGCGGTATTAATTCAGGCTCGATGGAGGACATTCAAGGTTCGTGCTATTTTCCATCGCCACCAATCTTCTATTATTGCAATACAATGTCGATGGAGGCAAAAGCTTGCAAAAAGGGAACTTCGAAGACTTAAACAAGAGGCTAATGAAGCTGGAGCATTGCGTTTGGCTAAGAACAAACTCGAGAAGCAGTTGGAGGATCTTACGTGGCGCTTGCATTTGGAGAAAAGATTGCGGGATGGTTGGCAACCTCTGCCCAACATTAGTGACTGGAGCCCTATCACAGCCGAACAACAAGCTTCAATGGAACAAACTTTCACAGAAGCTGAAATATATAGAGCAATGACTGATTTGGGCACTAATAAAACCTCGGGTCCGGACGATTTCACAGTTGAATTCTTTAAAAAATCATGGAACATCCTCCAGGAAGACAATAAAGGGGTGTCCAATGATTTTTTTAGGAATGGAATCATTAATGCTAATGTTAATGAGACATATATTTGCCTCATCCCTAAGAAGATTGGAGCAAAAACAGTGGGTGATTTTAGGCCAATCAGTCTTACTACATGTATTTACAAAATCATTGCAGGGGTGCTCTCAGAAAGATTAAAGAAAGTCCTTCCTTTCGTGGTCACAGAATATCGATCGGCTTTTGTAGATAACAGACAAATTCTTGATGCTCCTTTAATTGCTAACGAGCTCATTGATGAATGGAAACGAAGAAAAAAGAAAGGGGTAGTTATAAGATTAGACATTCAGAAAGCTTTTGACATGATAGATTGA | 3273 | 40.36 | MSLRKGSKVWVEDRDFAWVAAEVLDFVGKQVQVATVNGKKVLALPEKLLARDADEDDHGGVDDMTKLTYLNEPGVLYNLQRRYSLNDIYTYTGSILIAVNPFTKLPHLYDVHMMEMYKGAPFGELSPHVFAVADASYRAMISEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRALGNDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDANGRISGAAIRTYLLERSRVVQITNPERNYHCFYQLCASGRDAEKYKLDHPSHFRYLNQSQTYDLDGVSNAEEYIRTRRAMDIVGINHEDQEAIFRTLAAILHLGNVEFSPGKEHDSSVLKDEKSTFHLGVASNLLMCDSNLLVSALCTRSIQTREGIIVKALDCEGAVTSRDALAKTVYARLFDWLVDKINQSVGQDLNSQFQIGLLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIGLLDEACMFPRSTHETFSTKLFQNFRTHPRLERTKFSETDFTLSHYAGKVTYHTDTFLDKNRDYVVVEHCNLLASSRCTFVAGLFSSLPEESSRSSYKFSSVASRFKQQLQALMETLNSTEPHYVRCVKPNSLNRPQKFENLSILHQLRCGGVLEAVRISLAGYPTRRTYTEFIDRFGLLAPDLLDGSYDERLITEKILQKLKLKNFQLGRTKVFLRAGQIGILDARRAEVLDNAAKCIQRRLRTYHARKDFLLMRSTAIALQAYCRGCLARKFYVAKRESTAATTIQKYIRRWFFRNTYLVLCSATLTIQSSIRGFATRNRFLHDRRNKAAVLIQARWRTFKVRAIFHRHQSSIIAIQCRWRQKLAKRELRRLKQEANEAGALRLAKNKLEKQLEDLTWRLHLEKRLRDGWQPLPNISDWSPITAEQQASMEQTFTEAEIYRAMTDLGTNKTSGPDDFTVEFFKKSWNILQEDNKGVSNDFFRNGIINANVNETYICLIPKKIGAKTVGDFRPISLTTCIYKIIAGVLSERLKKVLPFVVTEYRSAFVDNRQILDAPLIANELIDEWKRRKKKGVVIRLDIQKAFDMID | 1090 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1187286 | 1204376 | - | Lag0004111.1 | Lac6g0142 | 609911 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0142 | 1090 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 4 | 53 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g0142 | 1090 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 308 | 598 | - | - | |
| Lac6g0142 | 1090 | Pfam | Myosin head (motor domain) | 61 | 717 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g0142 | 1090 | Gene3D | Kinesin motor domain | 62 | 659 | IPR036961 | - | |
| Lac6g0142 | 1090 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 50 | 777 | IPR027417 | - | |
| Lac6g0142 | 1090 | PANTHER | MYOSIN | 826 | 912 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lac6g0142 | 1090 | ProSiteProfiles | Myosin motor domain profile. | 59 | 729 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g0142 | 1090 | Gene3D | - | 249 | 306 | - | - | |
| Lac6g0142 | 1090 | Coils | Coil | 864 | 908 | - | - | |
| Lac6g0142 | 1090 | ProSiteProfiles | Reverse transcriptase (RT) catalytic domain profile. | 981 | 1090 | IPR000477 | - | |
| Lac6g0142 | 1090 | Gene3D | - | 829 | 879 | - | - | |
| Lac6g0142 | 1090 | Gene3D | - | 781 | 828 | - | - | |
| Lac6g0142 | 1090 | Gene3D | - | 731 | 780 | - | - | |
| Lac6g0142 | 1090 | Gene3D | - | 663 | 730 | - | - | |
| Lac6g0142 | 1090 | Gene3D | - | 435 | 620 | - | - | |
| Lac6g0142 | 1090 | CDD | MYSc_Myo11 | 73 | 717 | IPR036018 | - | |
| Lac6g0142 | 1090 | ProSiteProfiles | IQ motif profile. | 755 | 784 | - | - | |
| Lac6g0142 | 1090 | ProSiteProfiles | IQ motif profile. | 805 | 832 | - | - | |
| Lac6g0142 | 1090 | PRINTS | Myosin heavy chain signature | 193 | 220 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g0142 | 1090 | PRINTS | Myosin heavy chain signature | 425 | 453 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g0142 | 1090 | PRINTS | Myosin heavy chain signature | 89 | 108 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g0142 | 1090 | PRINTS | Myosin heavy chain signature | 478 | 506 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g0142 | 1090 | PRINTS | Myosin heavy chain signature | 146 | 171 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g0142 | 1090 | ProSiteProfiles | IQ motif profile. | 828 | 857 | - | - | |
| Lac6g0142 | 1090 | SMART | iq_5 | 802 | 824 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | SMART | iq_5 | 850 | 872 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | SMART | iq_5 | 827 | 849 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | SMART | iq_5 | 779 | 801 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | SMART | iq_5 | 731 | 753 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | SMART | iq_5 | 754 | 776 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) | 1001 | 1089 | IPR000477 | - | |
| Lac6g0142 | 1090 | SMART | MYSc_2a | 53 | 730 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g0142 | 1090 | FunFam | Myosin heavy chain | 249 | 303 | - | - | |
| Lac6g0142 | 1090 | Pfam | IQ calmodulin-binding motif | 853 | 872 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | Pfam | IQ calmodulin-binding motif | 734 | 752 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | Pfam | IQ calmodulin-binding motif | 806 | 823 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | Pfam | IQ calmodulin-binding motif | 830 | 848 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | Pfam | IQ calmodulin-binding motif | 759 | 773 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | Pfam | IQ calmodulin-binding motif | 783 | 800 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g0142 | 1090 | ProSiteProfiles | IQ motif profile. | 851 | 880 | - | - | |
| Lac6g0142 | 1090 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 779 | 878 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g0142 | Lac-Chr6:1187286 | Lac6g2827 | Lac-Chr6:45895318 | 7.30E-307 | dispersed | |
| Lac6g0142 | Lac-Chr6:1187286 | Lac4g0732 | Lac-Chr4:18227616 | 1.80E-71 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g0142 | K10357 | - | csv:101210527 | 1731.84 |