Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0152 ATGGACGGGGGCTCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAAGGCCGTAGAGCTGGCCTGATTAAGGCTCTAACTACTGGTGAAGTTTTGCTTCATTCTCCTCTTGAAATTGTTTCGCGCTTTCGTCCTTTTGGTTTTCTGAATTATGTTGAAGAGTTCTACCAGCAATGTGACCCTGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTCCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCGACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGAAGTTCTGAACCTCAAATAAAAACTACGAAGGCAGTTCAATCGAAAGACGAGGATGAGGAAGGTTTGGAAGAGGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGAGCAGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA 828 43.36 MDGGSPYNPRTVEEVFRDFKGRRAGLIKALTTGEVLLHSPLEIVSRFRPFGFLNYVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1296865 1301879 + Lag0004121.1 Lac6g0152 609921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0152 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 270 IPR013083 -
Lac6g0152 275 ProSiteProfiles Zinc finger PHD-type profile. 219 271 IPR019787 -
Lac6g0152 275 MobiDBLite consensus disorder prediction 167 196 - -
Lac6g0152 275 Pfam PHD-finger 222 268 IPR019787 -
Lac6g0152 275 PANTHER CPG BINDING PROTEIN 8 274 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lac6g0152 275 CDD PHD_AL_plant 221 271 IPR044104 -
Lac6g0152 275 SMART PHD_3 221 269 IPR001965 -
Lac6g0152 275 Pfam Alfin 55 160 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lac6g0152 275 ProSitePatterns Zinc finger PHD-type signature. 222 268 IPR019786 -
Lac6g0152 275 FunFam PHD finger alfin-like protein 214 270 - -
Lac6g0152 275 MobiDBLite consensus disorder prediction 167 215 - -
Lac6g0152 275 SUPERFAMILY FYVE/PHD zinc finger 211 272 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1806 Lac-Chr5:36012989 Lac6g0152 Lac-Chr6:1296865 6.30E-92 dispersed
Lac6g0152 Lac-Chr6:1296865 Lac6g3087 Lac-Chr6:48395336 2.00E-120 dispersed
Lac4g3002 Lac-Chr4:48280054 Lac6g0152 Lac-Chr6:1296865 6.40E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23957 PF12165 Alfin 1.20E-56 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0152 K26274 - csv:101208889 449.899