Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0172 ATGGAGGAAATGTCCCCAGCGGTTGTGGTGCCATTTAGGGTAGGTAATTCAGTCTGTGATAACCCCAACATGGCTACTCCCATGGATATCACAAGACTTAAGCTAATGGCAGATACTGCTGGTTTGTTATCTGATTCTGTAACTAAGGCTTCTGACAATCCGACTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGATTAGTATTACTACAGTTTCGGTTATGAATGATGACAAGTGCGAAGGGGTTCCGTTGACGGTCGTGTTGTCTCAAAATAATAGCAATTGGGTTGCAGCGGATGAGACGATATCTCATGGAAGTGAGGAAGATGATTCTTTATCTTTAGAGGGTGATCACATTTATGACAGCTCTTGTTCGCATTCAGTGGTTAGTGAGACTAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCTTCTTTTGAAGCATTTGGTTCCATCAGCAATGCGAAGGACGTTAGCTGCGTTGAGATTGCAGCTACAGCCAATCTTGGAGAGTCTAATGTTGAAAGTCTTGAGTCTCAGATTGCAAGTTCTTCTTCTGTAGCAGTTAGCCTCGAAGAAGATGTTGGAGATGGCTTAGGCGTTGAAGCATGTAACATGGTTCTCCAGCTACCTCTTGAGAAAAGAGGATGTGAACCGGTCAGTCGAAGTGTTTTTGAGGTAGATTGTGTTCCCCTTTGGGGATATACGTCGGTCTGTGGAAGAAGACCTGAGATGGAAGATGCAGTAGCAACTGTACCCAGGTTTTCAGAACTTCCTATCCAAATGCTTATTGGCAACCGAGTTCTTGATGGCTCAAGCAAGGCTGTAGCTCACCAAACTGTTCATTTCTTTGGAGTTTATGATGGTCATGGTGGCTCTCAGGTTGCAAATTTTTGTCGTGAACGTATGCATTTGGCTTTATCTGAGGAGATAGAACTTGCTAAACAAGATATAGCTGCTGGCAATATGAAGGATGATTGCCAAGAGCTATGGAGAAAGGCATTCACCAAATGTTTTCTAAAAGTTGATGCTGAAATTGGAGGGAGACCTGGTGTTGAGCCTGTTGCGCCCGAAACTGTAGGCTCCACTGCTGTTGTTGCAATTATCTGTGCCTCTCACATTATTGTTGCAAACTGTGGAGACTCAAGAGCAGTTCTTTGTCGTGGGAAGGAGCCAATGGCATTGTCCGTGGATCACAAACCAAATAGAGAAGATGAATATGAAAGGATTGAGGCTGCAGGAGGAAAGGTCATACAGTGGAACGGACACCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATCGGTGATAGATACTTGAAACCATGGATTATCCCAGAGCCAGAAGTGATGTTCATCCCTCGGGCGAAAGACGACGATTGCCTCATTCTAGCCAGTGATGGTCTGTGGGATGTGATGACGAATGAAGAGGTATGCGACCTGGCTCGAAGACGAATCCTACTCTGGCACAAGAAGAATGGTGTTCCTTCGCCTTCCGAGAGGGGGATGGGGATCGATCCTGCAGCCCAAGCAGCTGCAGAATACCTCTCGAACCGAGCTCTTCAAAAGGGCAGCAAAGACAACATCACAGTAATCGTGATTGATTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCATAA 1662 45.01 MEEMSPAVVVPFRVGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDNPTEVGSDDCKSSNGEEEISITTVSVMNDDKCEGVPLTVVLSQNNSNWVAADETISHGSEEDDSLSLEGDHIYDSSCSHSVVSETSSICGDDFLGSEVSSFEAFGSISNAKDVSCVEIAATANLGESNVESLESQIASSSSVAVSLEEDVGDGLGVEACNMVLQLPLEKRGCEPVSRSVFEVDCVPLWGYTSVCGRRPEMEDAVATVPRFSELPIQMLIGNRVLDGSSKAVAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKQDIAAGNMKDDCQELWRKAFTKCFLKVDAEIGGRPGVEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFIPRAKDDDCLILASDGLWDVMTNEEVCDLARRRILLWHKKNGVPSPSERGMGIDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKAQRKFKTKS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1385544 1388880 - Lag0004141.1 Lac6g0172 609941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0172 553 Gene3D - 226 553 IPR036457 -
Lac6g0172 553 Pfam Protein phosphatase 2C 260 536 IPR001932 -
Lac6g0172 553 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169(InterPro)
Lac6g0172 553 CDD PP2Cc 241 543 IPR001932 -
Lac6g0172 553 ProSiteProfiles PPM-type phosphatase domain profile. 239 543 IPR001932 -
Lac6g0172 553 MobiDBLite consensus disorder prediction 46 61 - -
Lac6g0172 553 FunFam Protein phosphatase 2C 16 227 553 - -
Lac6g0172 553 SMART PP2C_4 229 541 IPR001932 -
Lac6g0172 553 PANTHER PROTEIN PHOSPHATASE 187 542 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
Lac6g0172 553 MobiDBLite consensus disorder prediction 46 66 - -
Lac6g0172 553 SUPERFAMILY PP2C-like 234 544 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2456 Lac-Chr12:41629940 Lac6g0172 Lac-Chr6:1385544 1.90E-151 dispersed
Lac3g0953 Lac-Chr3:7743835 Lac6g0172 Lac-Chr6:1385544 9.00E-10 dispersed
Lac3g0954 Lac-Chr3:7745947 Lac6g0172 Lac-Chr6:1385544 4.00E-50 dispersed
Lac4g2925 Lac-Chr4:47603543 Lac6g0172 Lac-Chr6:1385544 1.00E-45 dispersed
Lac6g0172 Lac-Chr6:1385544 Lac8g2934 Lac-Chr8:46361483 1.40E-59 dispersed
Lac6g0172 Lac-Chr6:1385544 Lac7g2763 Lac-Chr7:46777990 2.20E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0172 K14497 - csv:101207918 986.097