Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0173 ATGGCGGAGGATCGCCTTTCTTCAAATGTCTGTTATGTTTGTTATCTTCCCCATTGCTTACCTTCATGGCTCTCCTCCATCGTCCCCACTGCTCTCTTCAATCGAAAATTTTGGGTTACATTCAAGCGGCTGCGGCACCAAGTTTCTGAGCGTCTTTGCAAAATGTCTCCCTCCTCGTATCCACCTGAAGATGGGATCCCCTTGAACACCACGGCGGTCGCCATTGACAAGGATAAGAACAGCCACCACTCCGTCCGGTGGGCTATCGATCATCTGGTCATAAGCAACCCGCTTATCATTCTCATCCATGTCAGGCATAAATCTAATCAACATCAGGGCGCGAGCGATTCTGAAACTGGGGAAACTGATGCCCAGCAGCTGTTTATTCCCTACCGTGGATATTGTGCTCGTAAAGGGGTTCAGATGAAGGAGGTTGTTCTTGATGATACTGATGTTCCCAAAGCACTTGTCGATTACGTTCACAAGAATTGCATCAACAATTTTGTAGTCGGAGCTTCAACAAGGAGTGCTTTAGCAAGGAAATTTAAAGGACCTGATGTTCCAACCAGCGTAATAAAAACTGCCCCGGACTTTTGTTCAGTGTATGTAATATCAAAAGGGAAGATAATATCTGCCAGGGCAGCTCTTCGGCCAGTGGCTAATACTGCCATGCCACCAAGACAACCACCATCACCGATTGCAGTTAAGCCAAGTGCTCAACCAGACAACAGCAACGAACAAGAAAATGCAGCCAAAGGGCAACTACCAAGGGAAGGATGGAAAAGTACGGGTTCGGACAAAATACTCAATGAAAGGAATGGTGGAAAACCAGCAAAAGCATTGACCCGTGAGAGGCCAAAAACTTCTCCTACTAATATAACATTGGAAAATGTAGAGGCTCCTAATCGGGGATCTAGGTCTTCATTTAGCCGTGAGTCGATCTCTGATGATAATACGTTGAATGCACAGATGGCTTTTGGTTCAATGGATGTGAGTGGTCAAAATTTAGATTTCAGTATTAGCTCAAATGTGTCAACCGATTCTGCTTCAGCACAATCTACTCGAGAACTAGAGGCTGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCCAAGAACAAGGCTAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTTGAGGAAGTCAGGCTAGCTGAAGAGGCTGCTCTTGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCTGAAATGAAGGCCAGACGAGAGGCTGAAGAGAAAAAACGAGCACTGAGTGCTCTAGCTCAGAATGACGTCCGATATAGAAAATATACCATAGAGGAAATTGAGGAATCTACTGAAAAGTTCTCTGAAAAATTGAAAATTGGAGAAGGTGGATACGGTCCTGTTTATGGAGGCAAACTTGATCATACAGCTGTTGCGATTAAAGTTTTAAGACCTGACGCTGCTCAAGGACGAAAGCAATTCCAACAAGAGGTGGAGGTTCTTTGTTGCATTAGACATCCAAACATGGTCCTCCTTCTTGGGGCGTGCCCCGAGTATGGCTGCTTGGTATACGAATACATGCATAATGGGAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGAAGATTCAAAATAGCTGCTGAAATTGCAACCGCACTCCTTTTTCTTCACCAAGCAAAGCCAGAACCACTTGTGCATAGGGACCTTAAACCAGCTAACATTCTCTTGGACCGCAATTATGTGAGCAAAATCAGTGATGTTGGCTTGGCCCGATTAGTCCCACCTTCTGTAGTTGATCAAGTCACCCAATATCACCTGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCTGAGTACCAACAAACAGGAAAGTTAACAACAAAATCAGATATTTACTCATTCGGAATTATGTTACTTCAAATTATCACTGCCAAGCCTCCAATGGGTCTGGCTCACCATGTGCAAAGGGCCATTGAGAAAGAGAGGTTTGATGAGATGCTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATAAATTTTTCAAAACTGGCATTGAAGTGCGCTGAACTGAGGAAGAGAGACAGGCCAGATCTTGGAACAGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGGAGGAGTTCTGACAAACGTGAGAGCCGGAATCACTTTCCCCGCTCTTCCGCATCAAGTTCCAGTTCGAGGCCACAGTCATCAAATGAGGATTCGAGAATAAGTTATACTGATGAAGGGAGTTAA 2397 44.85 MAEDRLSSNVCYVCYLPHCLPSWLSSIVPTALFNRKFWVTFKRLRHQVSERLCKMSPSSYPPEDGIPLNTTAVAIDKDKNSHHSVRWAIDHLVISNPLIILIHVRHKSNQHQGASDSETGETDAQQLFIPYRGYCARKGVQMKEVVLDDTDVPKALVDYVHKNCINNFVVGASTRSALARKFKGPDVPTSVIKTAPDFCSVYVISKGKIISARAALRPVANTAMPPRQPPSPIAVKPSAQPDNSNEQENAAKGQLPREGWKSTGSDKILNERNGGKPAKALTRERPKTSPTNITLENVEAPNRGSRSSFSRESISDDNTLNAQMAFGSMDVSGQNLDFSISSNVSTDSASAQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARREAEEKKRALSALAQNDVRYRKYTIEEIEESTEKFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVVDQVTQYHLTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFDEMLDPTISDCPLEEAINFSKLALKCAELRKRDRPDLGTVIVPELNRLRDIGRSSDKRESRNHFPRSSASSSSSRPQSSNEDSRISYTDEGS 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1398039 1401796 + Lag0004142.1 Lac6g0173 609942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0173 798 SUPERFAMILY Protein kinase-like (PK-like) 470 746 IPR011009 -
Lac6g0173 798 MobiDBLite consensus disorder prediction 758 798 - -
Lac6g0173 798 MobiDBLite consensus disorder prediction 237 251 - -
Lac6g0173 798 CDD STKc_IRAK 494 754 - -
Lac6g0173 798 Coils Coil 354 374 - -
Lac6g0173 798 MobiDBLite consensus disorder prediction 221 313 - -
Lac6g0173 798 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 461 560 - -
Lac6g0173 798 CDD STK_N 70 207 - -
Lac6g0173 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g0173 798 Gene3D Phosphorylase Kinase; domain 1 465 560 - -
Lac6g0173 798 MobiDBLite consensus disorder prediction 771 792 - -
Lac6g0173 798 Coils Coil 414 469 - -
Lac6g0173 798 FunFam Os07g0541700 protein 561 650 - -
Lac6g0173 798 Pfam Protein tyrosine and serine/threonine kinase 492 746 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g0173 798 MobiDBLite consensus disorder prediction 285 313 - -
Lac6g0173 798 ProSiteProfiles Protein kinase domain profile. 488 751 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0173 798 PANTHER OS02G0152300 PROTEIN 72 768 IPR051348 -
Lac6g0173 798 Pfam Universal stress protein family 73 203 IPR006016 -
Lac6g0173 798 Gene3D Transferase(Phosphotransferase) domain 1 561 776 - -
Lac6g0173 798 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 71 204 - -
Lac6g0173 798 Gene3D HUPs 63 204 IPR014729 -
Lac6g0173 798 SMART serkin_6 488 751 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0173 Lac-Chr6:1398039 Lac6g1163 Lac-Chr6:11055113 1.60E-197 dispersed
Lac4g2997 Lac-Chr4:48196099 Lac6g0173 Lac-Chr6:1398039 2.60E-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86242 PF07714 PK_Tyr_Ser-Thr 2.80E-41 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0173 - - - 0.0