Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0198 ATGTTTACTGCCCTGCAATGGAACGATTTGGGGGAAGCTTCCCGAGGTCGTTTGAGTCCCTCTGGCAATGCTGAGTTTCAAGATCAGTTAGCAAGAGCAATTCCTATTACTTCTCTTTTTCAGTCCACCTCTCTTGCTCCAGTGAACAATATTCGTGAAAATACAAAAGATTCAGCACTTTCAGACTCTCAGTTCCAGCAGTTAGAAACTTTTAGAACTTGCATCTTACACAGTTCCTCTAATGCTTCAAATTCTTCATTTTCAAGTTCTATGAACGGTGAAGGTGATGAGTCTCTATGTAATGCAAATAACAAGTGGGAAAGCGATAGATTCCATTGTATTCAGCAACTTCCTAGGGAGAATACAGAAAGATCAGATTTCCAGACCATCTCGTTGATGGAAAACCTGGATCAGAATGGCTGGATGCCACCCAACCCTATGAGCTCTAAGTTATGGAATGAGCTTTCTCTAAGTCTCGCCACATCCCAACCCGTTATTGTTGGAGGAGCCAATTTCCTGGACCAGTATTCACAGTTGGCTTTTTCTTGTGCTACTCAGCCTTACTTGAACAGCACAGAATTAGCCTCGAACTTGAATTCGTGCAACTCCAGGGATCTCTCTCTAAGTTACGGATGTGGTAGTCCTGTTCACCACTCTCAAACAATAGCGGGATCGAGATATCTTTCTGTCATTCAGGACATACTTTCCCAAATTGCAAGCTATCCACTGGAAAGTTCAGATCAATTTAGTCATTCAACAACCACAGCTGGGTTCGTTCCATTCTCATCAAGTTCCCTGGATGATGCGACAACTGAATTTGGTTCTGATGCAATTGGTAGATACAGTTCTCAAACGGAGCCTCAGTGGCAAAAACTATCTGGTGATGCCAAGAGATCCCACCTGTTGACTCTACTACAATTGATTGATGAGAGGTACACTCAATGCTTGGATGAGATTCATACCGTTACATCTGCATTTCATGCTGCCACTGATTTGGACCCTCGGTTGCATACTCGTTATACTCTCCAGACAATCACTTCTGTGTACAAAAACTTGAGGGAGAAGATAACCAATTGTATTTTTGCTATGGGGATGCAATCTAACAAAATGTGCACCAAGGAGAAGGAAAAATCCTTCGAGGCAACGTTCATCCAGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGACCACAGAGAGGCTTACCTGAAAAATCTGTCTCAGTTCTGAGGGCGTGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTATCTAATTGGTTCATCAATGCTCGTGTCCGGTTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCAGTCAAAATGAGGAGAGTTTCGGAAGAATTCATCGATCCCAGATAAACATCAGCAGCGAGAAGATGTAG 1494 42.77 MFTALQWNDLGEASRGRLSPSGNAEFQDQLARAIPITSLFQSTSLAPVNNIRENTKDSALSDSQFQQLETFRTCILHSSSNASNSSFSSSMNGEGDESLCNANNKWESDRFHCIQQLPRENTERSDFQTISLMENLDQNGWMPPNPMSSKLWNELSLSLATSQPVIVGGANFLDQYSQLAFSCATQPYLNSTELASNLNSCNSRDLSLSYGCGSPVHHSQTIAGSRYLSVIQDILSQIASYPLESSDQFSHSTTTAGFVPFSSSSLDDATTEFGSDAIGRYSSQTEPQWQKLSGDAKRSHLLTLLQLIDERYTQCLDEIHTVTSAFHAATDLDPRLHTRYTLQTITSVYKNLREKITNCIFAMGMQSNKMCTKEKEKSFEATFIQKQWALQQLKRKDNQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSSQNEESFGRIHRSQINISSEKM 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1548481 1550283 + Lag0004167.1 Lac6g0198 609967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0198 497 SUPERFAMILY Homeodomain-like 402 470 IPR009057 -
Lac6g0198 497 CDD homeodomain 401 462 IPR001356 GO:0003677(InterPro)
Lac6g0198 497 SMART prehox3 216 358 IPR006563 -
Lac6g0198 497 Pfam Associated with HOX 222 357 IPR006563 -
Lac6g0198 497 Pfam Homeobox KN domain 418 457 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac6g0198 497 SMART HOX_1 401 465 IPR001356 GO:0003677(InterPro)
Lac6g0198 497 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 184 477 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac6g0198 497 Gene3D - 395 476 - -
Lac6g0198 497 ProSiteProfiles 'Homeobox' domain profile. 398 461 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0198 Lac-Chr6:1548481 Lac9g1723 Lac-Chr9:36821664 2.10E-35 dispersed
Lac6g0198 Lac-Chr6:1548481 Lac10g2756 Lac-Chr10:42068568 9.20E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23962 PF07526 POX 3.20E-21 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0198 - - - 0.0