Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0213 ATGATCACCGAATCAATGTTCCTCAATCCAACGGCCCACATTTCATCCTGGGACTCCCTCGACGATTCCGCCGCCGGAATCCCCTCCTATTTCGCCGCCGACCACGTCTCGCCGCTCGACTCGCCGACGTCGGCGCTCATGGAGTTCGACTCGTCGTTCTGGGAGGATCAGGATCTGCCGGCGGCGGTCGACGCCTTCTCGTGCGACCATTTCCGGATGTACGACTTTAAAGTTCGTACGTGCGCACGTGGGAGGTCGCACGATTGGACGAAATGTCCGTACGCTCACGCCGGCGAGAAGGCTCGCCGCCGGGATCCGAGGAAGTTCAACTACTCCGGCGTCGAGTGCCCGAATTTACGCCATGGGAGTTGTAAAAAAGGGGATGCCTGTGAGTACGCTCATGGAGTTTTCGAAATTTGGCTCCACCCGGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGGCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACTTCGGAGCAACTCCGGATTCCTGCAAAACAGAGCCTCCGGTCTCCACGGGCGGCGACTGTATCATCGCCGACGTCGATCCTAATCTCGCCGTCGTCGGACTCCCCTCCGATGTCTCCGATCAGCCCTGCAACCACCGGCGGCGAATCGTTCAGCAGATTGGCCGCATTGATGTACAATCTCCAGCTTGACGAATTAAAGCCGAATCCGTCAGTCGCCGGATTTGGTTCGAGTCTCCGGCGGAGCTCCGGCGGATTCGATCTATGGGACAGAAGTAACGAAGAAGAACCAGCAATGGAGAGAGTGGAATCGGGAAGAAACCTCCGAGCCCAAATGTACGCCAAATTAATGCGAGAGAATTCAGTGGACAGATCGCCGCCGCTGATATGGGCTGGATTTCGGAGCTAA 906 58.06 MITESMFLNPTAHISSWDSLDDSAAGIPSYFAADHVSPLDSPTSALMEFDSSFWEDQDLPAAVDAFSCDHFRMYDFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGVECPNLRHGSCKKGDACEYAHGVFEIWLHPDRYRTQPCRDGIGCRRRVCFFAHTSEQLRIPAKQSLRSPRAATVSSPTSILISPSSDSPPMSPISPATTGGESFSRLAALMYNLQLDELKPNPSVAGFGSSLRRSSGGFDLWDRSNEEEPAMERVESGRNLRAQMYAKLMRENSVDRSPPLIWAGFRS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1667496 1668401 - Lag0004182.1 Lac6g0213 609982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0213 301 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872(InterPro)
Lac6g0213 301 SMART c3hfinal6 110 136 IPR000571 GO:0046872(InterPro)
Lac6g0213 301 SMART c3hfinal6 145 168 IPR000571 GO:0046872(InterPro)
Lac6g0213 301 MobiDBLite consensus disorder prediction 190 211 - -
Lac6g0213 301 Gene3D - 107 178 - -
Lac6g0213 301 PANTHER UNKEMPT FAMILY MEMBER 55 220 IPR045234 -
Lac6g0213 301 FunFam Zinc finger CCCH domain-containing protein 66 68 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0213 Lac-Chr6:1667496 Lac6g3056 Lac-Chr6:48163544 2.70E-62 dispersed
Lac2g0440 Lac-Chr2:3241725 Lac6g0213 Lac-Chr6:1667496 4.60E-82 wgd
Lac3g0988 Lac-Chr3:8046319 Lac6g0213 Lac-Chr6:1667496 7.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23964 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0213 - - - 0.0