Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0216 ATGGAAGATCAGTACAACCCTCATGGTGATAGCTCTAGGGGAAATTTCTTGTACACTTCAGTCCCCGTTTTGGCCACCAATTCTTCTTCCCCTTCGGGCAATTTCGTAATTAGACCCTCTTCTTCAAATGGAGCTGGCTCAATTTTTGGCAATAATCCCATGGCTGTAAATAATCTCGCCGGCGACTGTAATTTTCCGCCGTCCGATCAAGAATTCCGGCTTGTAAAAGTGGAGCCGAGTGGTTCACAATCTCATCATCATCAACAACAACAACAACAACAAGTTCATGATTTTCATTACCATTTAATGAGAGAGTTTCAAATTAGTAGCGGTGGAAGTAACGATGTCGATGCCATGAAAGCTAAAATTATCTCTCACTCTCAATTCTCTAATCTTCTCCAAGCTTTCTTGGATTGCCAAAAGGTCGGAGCTCCGCCGGAGGTGGCGGCGAAGCTTGCGTCGATACGAGAGGAATTTGAGGAGCGGCGGCGGTCTTCAATGGCGTCTACTACTGAGGGTTCGAGTGATCCAGAACTCGATCACTTCATGGAAGCTTACTATGGGATGTTGGTGAAGTATAGAGAGGAGCTGACAAGGCCTATTCAAGAAGCTGCAGATTTCATGCAGAGAATTGAATCTCAGCTCAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGCGACAGAAGAGAAATGCGAAGGAATGGGATCATCGGAGGAGGAGGAAGAGAAGGGCGGGGAAGGAGAAAGAGATGGAATGGATCAAATCGACCCACGTGCAGAAGAGCGAGAGCTAAAGAATCACTTACTGAAAAAATACAGTGGGTATCTGAGCAGTCTAAAGCAAGAGCTTTCAAAGAAGAAGAAGAAAGGCAAACTCCCAAAAGACGCAAGACAAGAGCTACTCCGATGGTGGGAATTGCACAACAAATGGCCATACCCATCGGAGGCAGAAAAGTTGGCATTGGCTGAATCCACTGGGTTGGATCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAGCCCTCTGAGGATGTACAGTTCATGGGCATGGAGGGGTTTTACCATCCCAATGCTGCTGCTGCTGCTGCCGCCTTTTATTTCGATGGCCATTACATGGCCGACGCCCATTATCGATTGGGTCCTTGA 1170 46.15 MEDQYNPHGDSSRGNFLYTSVPVLATNSSSPSGNFVIRPSSSNGAGSIFGNNPMAVNNLAGDCNFPPSDQEFRLVKVEPSGSQSHHHQQQQQQQVHDFHYHLMREFQISSGGSNDVDAMKAKIISHSQFSNLLQAFLDCQKVGAPPEVAAKLASIREEFEERRRSSMASTTEGSSDPELDHFMEAYYGMLVKYREELTRPIQEAADFMQRIESQLNTLCNGSFQILASATEEKCEGMGSSEEEEEKGGEGERDGMDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAAAAFYFDGHYMADAHYRLGP 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1692084 1696091 + Lag0004185.1 Lac6g0216 609985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0216 389 CDD homeodomain 298 350 IPR001356 GO:0003677(InterPro)
Lac6g0216 389 Pfam Homeobox KN domain 306 345 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac6g0216 389 SUPERFAMILY Homeodomain-like 287 359 IPR009057 -
Lac6g0216 389 Pfam KNOX1 domain 118 160 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g0216 389 Pfam ELK domain 266 287 IPR005539 GO:0003677(InterPro)
Lac6g0216 389 Pfam KNOX2 domain 174 219 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g0216 389 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 117 356 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac6g0216 389 SMART ELK_2 178 198 IPR005539 GO:0003677(InterPro)
Lac6g0216 389 SMART ELK_2 266 287 IPR005539 GO:0003677(InterPro)
Lac6g0216 389 ProSiteProfiles ELK domain profile. 266 286 IPR005539 GO:0003677(InterPro)
Lac6g0216 389 SMART KNOX1_2 117 161 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g0216 389 SMART KNOX2_2 169 220 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g0216 389 MobiDBLite consensus disorder prediction 235 257 - -
Lac6g0216 389 SMART HOX_1 288 353 IPR001356 GO:0003677(InterPro)
Lac6g0216 389 MobiDBLite consensus disorder prediction 231 257 - -
Lac6g0216 389 Gene3D - 283 355 - -
Lac6g0216 389 ProSiteProfiles 'Homeobox' domain profile. 286 349 IPR001356 GO:0003677(InterPro)
Lac6g0216 389 MobiDBLite consensus disorder prediction 159 178 - -
Lac6g0216 389 ProSitePatterns 'Homeobox' domain signature. 324 347 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3180 Lac-Chr1:51962719 Lac6g0216 Lac-Chr6:1692084 3.60E-66 dispersed
Lac6g0216 Lac-Chr6:1692084 Lac6g2534 Lac-Chr6:43116099 1.40E-58 dispersed
Lac2g0436 Lac-Chr2:3206245 Lac6g0216 Lac-Chr6:1692084 1.70E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23965 PF03791 KNOX2 1.10E-23 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0216 - - - 0.0