Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0225 | ATGGCTGGTTCTGTCATTGAATATGAATTCAACTGTTCTTATGGAATTAGCCCTCAGCCATTTTCTGAAAATAATGCTTCAGAAATGGCATTGGGTTCAGTGTCCATATTCAAATCTACTGTTGAAGCTGACAATTCCTTTTCTTCTGGTTTTGGAGCTTCTGCAACAGTTCCTCTGGAGAGTGAGGGAGTGAAAACCACTTCCCACCTTCTTCATGATCCTTCAAGTTTGAGTTTTGATATGTTTGGAAGTGGGAACTTCTCAGAAATGGTGGGTTCTTTTGGCTTTGTAACTGAAGGTCACCAGAGCCAGATCGCTACTATTAAGTGTCCATTTAGTTATGTGCCAAATCTGGATGCAGGAAGCAGTGAGGAAGAAAGAGTCTCAACCAAGAACGATGCGAAGACTCGACTCGATTGCGCTAATGAAAAGAGAAGAAAATTGGCTCTTGGTTCCAATTCTTCCAGCTCAAATAAGAATGCTGTGGAACCAATTGAGAATGTATCTGAGATACTTAAAAAAGATGACAAAACTCTGAAAGTTGAGCATAGAATGTGTGCAAATTATAACACCAAGTCTGATGGCAAACAAGCCAAAGGAGGCTCTCAAAGTGTACAAGCCCCTAAGGAGAATTATGTTCATGTTCGAGCCCGACGGGGCCGAGCTACTAATAGCCATAGCCTTGCAGAAAGGGTTAGGAGGGAAAAGATCAGTGAACGAATGAAGCTGCTGCAAGATCTTGTTCCTGGATGCAATCAGATTACTGGGAAAACCGTTGTGCTAGATGAAATTATCAGTTATGTGCAATCACTGCAACAACAGGTTGAGTTTCTATCGATGAAACTCGCCGATGTCGGTCCAGAATCAAACTTGGATACAGAGGAGATTCTACTCAGAAATATTCTTCGTGCACAAGGAGAAAACGTCGACGGTGTTCTTGCAATCAATCCTAGATTAACCACATCTCACACTACTCATCAAGCAACATTTCAACTTCATGGAACAATACCAACAATGCCAAGAACATCTCAGAAACTTTGTAGTCTTTCCAAGACGAAACGATAA | 1065 | 41.5 | MAGSVIEYEFNCSYGISPQPFSENNASEMALGSVSIFKSTVEADNSFSSGFGASATVPLESEGVKTTSHLLHDPSSLSFDMFGSGNFSEMVGSFGFVTEGHQSQIATIKCPFSYVPNLDAGSSEEERVSTKNDAKTRLDCANEKRRKLALGSNSSSSNKNAVEPIENVSEILKKDDKTLKVEHRMCANYNTKSDGKQAKGGSQSVQAPKENYVHVRARRGRATNSHSLAERVRREKISERMKLLQDLVPGCNQITGKTVVLDEIISYVQSLQQQVEFLSMKLADVGPESNLDTEEILLRNILRAQGENVDGVLAINPRLTTSHTTHQATFQLHGTIPTMPRTSQKLCSLSKTKR | 354 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1793054 | 1794683 | - | Lag0004194.1 | Lac6g0225 | 609994 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0225 | 354 | Pfam | Helix-loop-helix DNA-binding domain | 224 | 272 | IPR011598 | GO:0046983(InterPro) | |
| Lac6g0225 | 354 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 219 | 284 | IPR036638 | GO:0046983(InterPro) | |
| Lac6g0225 | 354 | CDD | bHLH_AtBPE_like | 211 | 296 | - | - | |
| Lac6g0225 | 354 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 221 | 271 | IPR011598 | GO:0046983(InterPro) | |
| Lac6g0225 | 354 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 122 | 321 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
| Lac6g0225 | 354 | FunFam | Basic helix-loop-helix transcription factor | 218 | 290 | - | - | |
| Lac6g0225 | 354 | Gene3D | - | 218 | 290 | IPR036638 | GO:0046983(InterPro) | |
| Lac6g0225 | 354 | SMART | finulus | 227 | 277 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g0225 | Lac-Chr6:1793054 | Lac8g2147 | Lac-Chr8:39867065 | 1.90E-38 | dispersed | |
| Lac2g0387 | Lac-Chr2:2845294 | Lac6g0225 | Lac-Chr6:1793054 | 1.40E-06 | wgd | |
| Lac2g0427 | Lac-Chr2:3116135 | Lac6g0225 | Lac-Chr6:1793054 | 3.90E-48 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23967 | PF00010 | HLH | 1.10E-05 | No_clan | Lac | TF |
Pathway information