Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0226 ATGGAAGCCCTCTCAAGATCCCAAACCGAAGGGATGGTGCCGAGTTCGTCACCGAAGCTTGAGGACTTTCTCGGCGGTGGTGCAACAATGGCGGGTCGAGGTTTTTTCAATCAAAATGCTGAATCCGAACCCGACAGGGAACATTCGCTGGACCTTCTTCACCGACCCATTAGACAGAATCAAGAACACCAACAGATTCTCATTCAAAATTCTCATCAGTACTACTCTGGGTTGGTTCCTTCTTCCATTGGAATGGGAACTTGCGATCCTCAGATTCTACCGGCGGATGACGACGAAATCCCTTGCCTTAGAAACTGGGTCTCTCGTTCCCACTACGCCCATAATACTCTCGAGCAGCATATCGGCGGTGCCGCGCTGGTGAATGACGGCGGCGGTGGCGGTGGCGGAGGCGGTGGCTCTGCCTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGCTTGTCCATGAGCCCAGGTTCTCAATCGAGCTCGTTTACTGCTTCCGGCCAGATCTCACCGACCGGAGGGGACGGCGCTGCCGTGGAAACTAAAAAAAGAGGCCCCGGAAAACTCTGCCAGAAACAGCCCGTTCACCGCAAGTCCATCGACACTTTTGGCCAAAGAACTTCCCAATATCGTGGCGTTACAAGACATAGATGGACTGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAAAAAGAAGGACAAACCAGGAAAGGAAGACAAGGAGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTACGATCTAGCTGCTCTCAAGTACTGGGGACCCTCGACCCATATAAACTTTCCATTGGAGAATTATCAGACTGAACTGGAAGAAATGAAAAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGTTTTTCGAGGGGCGCTTCAGTATTCCGTGGAGTAACAAGACACCACCAACATGGAAGATGGCAGGCTAGAATTGGGAGAGTTGCTGGAAACAAAGATCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATTGCAGCAATCAAATTCCGCGGTGTAAATGCAGTCACCAACTTTGACATTTCCAGATACGATGTCGAGAGAATCATGGCCAGTAGTACCCTACTGGCAGGCGAGCTGGCCAGAAGGAACAAGGAGGTCGACCCGAGCAGCGACCCCGTCGTTGCCTACGACTCCTCGACCACGCCAAACAACAATGGCGGGATCGGGATAGGGATCGAAATGAATCCCAACGACAATGGCGCCAATGGGAATGGTACTGATTGGAAGATGGCATTATATCAGAATCCATCACATCAGCAACAGCAACAACAACAGGCAGCAGCTGCAGCTTGTGTTGCTGAATCAATGGATCATCATCACAACAAGTCCATGCCCACGTCGGGAGGCTATCGTAACGCGTCGTTTTCGATGGCATTGCAGGACTTGATCGGGATTGAGTCCTTGAACTCTAATAGTCATGGCATTGAAGATGATGTGAGCAAACAAGTGACTCATTTTTCAAATTCGTCGTCACTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGCAGCCCCGACAAGACGAACGCATCAATGCCATTCGCAAAGCAACCACCCCTGATGGCATCGAAGCTAATCGGTGCAACGAGCGGGGTCGGGTCATGGTATCCGACCCCACAGCAGCTGAGGCCAACAGCCATTTCCATGGCACATTTGCCTGTTTTTGCAGCTTGGAATGACACTTAA 1776 50.56 MEALSRSQTEGMVPSSSPKLEDFLGGGATMAGRGFFNQNAESEPDREHSLDLLHRPIRQNQEHQQILIQNSHQYYSGLVPSSIGMGTCDPQILPADDDEIPCLRNWVSRSHYAHNTLEQHIGGAALVNDGGGGGGGGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGAAVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASSTLLAGELARRNKEVDPSSDPVVAYDSSTTPNNNGGIGIGIEMNPNDNGANGNGTDWKMALYQNPSHQQQQQQQAAAAACVAESMDHHHNKSMPTSGGYRNASFSMALQDLIGIESLNSNSHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNASMPFAKQPPLMASKLIGATSGVGSWYPTPQQLRPTAISMAHLPVFAAWNDT 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1805209 1807962 - Lag0004195.1 Lac6g0226 609995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0226 591 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 161 450 - -
Lac6g0226 591 CDD AP2 212 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 CDD AP2 311 372 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 MobiDBLite consensus disorder prediction 155 200 - -
Lac6g0226 591 SUPERFAMILY DNA-binding domain 311 372 IPR016177 GO:0003677(InterPro)
Lac6g0226 591 PRINTS Ethylene responsive element binding protein signature 214 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 PRINTS Ethylene responsive element binding protein signature 352 372 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 MobiDBLite consensus disorder prediction 525 545 - -
Lac6g0226 591 MobiDBLite consensus disorder prediction 155 175 - -
Lac6g0226 591 FunFam AP2-like ethylene-responsive transcription factor ANT 212 278 - -
Lac6g0226 591 MobiDBLite consensus disorder prediction 392 413 - -
Lac6g0226 591 MobiDBLite consensus disorder prediction 1 24 - -
Lac6g0226 591 SUPERFAMILY DNA-binding domain 212 278 IPR016177 GO:0003677(InterPro)
Lac6g0226 591 MobiDBLite consensus disorder prediction 1 15 - -
Lac6g0226 591 ProSiteProfiles AP2/ERF domain profile. 213 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 Pfam AP2 domain 311 362 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 Pfam AP2 domain 213 268 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 FunFam AP2-like ethylene-responsive transcription factor 311 372 - -
Lac6g0226 591 ProSiteProfiles AP2/ERF domain profile. 312 370 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 SMART rav1_2 213 282 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 SMART rav1_2 312 376 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 MobiDBLite consensus disorder prediction 525 541 - -
Lac6g0226 591 Gene3D AP2/ERF domain 312 372 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0226 591 Gene3D AP2/ERF domain 212 278 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0226 Lac-Chr6:1805209 Lac6g1794 Lac-Chr6:28856523 8.20E-95 dispersed
Lac12g2483 Lac-Chr12:41881581 Lac6g0226 Lac-Chr6:1805209 2.40E-102 transposed
Lac1g2561 Lac-Chr1:46965413 Lac6g0226 Lac-Chr6:1805209 6.50E-07 wgd
Lac1g2705 Lac-Chr1:48271738 Lac6g0226 Lac-Chr6:1805209 1.30E-138 wgd
Lac2g0425 Lac-Chr2:3095792 Lac6g0226 Lac-Chr6:1805209 1.30E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23968 PF00847 AP2 3.90E-10 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0226 K09285 - csv:101212797 969.533