Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0235 ATGCCGATGTACCAGCCCTCTGCTTGGAGAGACGGGGATCCCAAGCTCGTTGTGGGTTGCGGAGCGCAGATTCTAGATCTGGAAACTGTCGTCAAAGATGGGATTCTCGGCGGCGGCGGCGGCGGTGGGCTCATCTCCGGCGGTGGTGCTGAGAAATTGGATCTAAAGGAGATGATTGAGGAGCTGGAGTCGTCGATAGAGGTCCCATCGGTGTTCATTTGCCCAATTTCGCTCGAGCCGATGCAAGATCCAGTGACCCTTTGCTCCGGGCAGACCTACGAGCGGTCCAACATTCTGAAATGGTTCTCTTTAGGCCATTTAACTTGCCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTTCATCAGTTGATTCACACCTGGTTTTCGCAGAAGTACTTAGCATTGAAGAAGAGATCGGAGGACGTTCAGGGCAGAGTTTTAGAGCTTTTGGATTCGTTGAAGAAGGTCAAGGGCCAAGCTAGGGTTCAGTCCCTCAAAGATCTCCGACATGTCGTCGCCACCCATTCCTCCGCCAAGAAAATGGTGGTCGACAACGGCGGCGTCGCGCTAATCTCCTCTCTTTTGGGTTCTTTCACTTCTCACGCAGTTGGGTCCGAAGCCGTGGGGATCCTCGTCAATTTGGATCTCGATTCGGAGTTGAAGAAGAATCTGATTCAACCCACGAGAATGTCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATCAATTGCACGAAATTCATCAAGATGTTGATTGAGGACGACGATTTAAGAACAGAGAACGTTTCAAGTTTGAGTCTACTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGACACCCAAATGGAGTAACCGCCGGACTCAGTTTACTCCGAACGCTCTGTTCAAACGAATCAATCAGAAAGCAACTCGTAAGCATCGGCGCCGTCGCGAAACTCGGCGGCGCCCTCTCCGGTTTAAACGCCGATTGCTTGGAATCGGCGCTTTATATTCTCGACGTTTTGTCGTCCCTACCAGAGGGGAGATTAGCGTTGAAAGATTGCGAAGATACGATTAGAAATTTGGTTAAATTGTTGATGAAAGTTTCTGAGATTTGTACTCAATTTGCGTTGTCGATTTTGTGGGCGGTTTTCAAGCTAGCGCCGGAGGAATGTGCGGTGCTCGCGGTGGAGGCGGGATTGGCGGCGAAGCTGCTGCTTGTGATACAAAGTGGGTGCAATAAAGAGCTAAAACAGAGATCTTCTGAGCTATTGAAATTGTGTAGTCTAAATTACCCAGATTCTATCTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1359 48.86 MPMYQPSAWRDGDPKLVVGCGAQILDLETVVKDGILGGGGGGGLISGGGAEKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVATHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIETKINCTKFIKMLIEDDDLRTENVSSLSLLVGLLRMVKDQRHPNGVTAGLSLLRTLCSNESIRKQLVSIGAVAKLGGALSGLNADCLESALYILDVLSSLPEGRLALKDCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAVLAVEAGLAAKLLLVIQSGCNKELKQRSSELLKLCSLNYPDSIFISKCKLTRTIQ 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1897139 1898497 - Lag0004204.1 Lac6g0235 610004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0235 452 PANTHER WDSAM1 PROTEIN 64 445 IPR045185 GO:0061630(InterPro)
Lac6g0235 452 CDD RING-Ubox_PUB 69 121 IPR045210 -
Lac6g0235 452 SUPERFAMILY ARM repeat 157 439 IPR016024 -
Lac6g0235 452 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac6g0235 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 140 IPR013083 -
Lac6g0235 452 SMART Ubox_2 71 134 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac6g0235 452 Pfam U-box domain 68 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac6g0235 452 Gene3D - 141 449 IPR011989 -
Lac6g0235 452 SUPERFAMILY RING/U-box 64 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0235 Lac-Chr6:1897139 Lac9g2738 Lac-Chr9:45540783 1.70E-28 dispersed
Lac9g0191 Lac-Chr9:3002742 Lac6g0235 Lac-Chr6:1897139 3.50E-25 transposed
Lac2g0412 Lac-Chr2:3024051 Lac6g0235 Lac-Chr6:1897139 1.20E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0235 - - - 0.0