Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0237 ATGGGCCGGAAAGTTTACAAGATTCATTTCTTTTTCTTGTTCGGATCTCAAGCAGCATTTGCTGTACGAAACATAATTTGGAAGCAGCAGGTGGCTGCAAACTCCACTCTCGCTTTCAGTGAAGCCACCCATTCGGAAATGGAGGACGCCTATGCCAGATCTATCACTGAGGTTTTGGATTTTTTTGGGGTTGACCCATCACAAGGTCTTACAGACGATCAGGTTTTGCATCATGCTAAAATTTATGGAAAAAACGTGCTACCTGAGGAGAAAAGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTAATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCATTTTTGGAACCTTCAGTAATTCTAATGATACTGGCTGCAAATGCAGCAGTAGGAGTGATTACGGAAACAAATGCTGAAAAGGCTCTCGTGGAACTACGGGCATACCAGGCAGATATTGCTACTGTGATGAGAAATGGTTGTTTTTCAATACTTCCGGCTACTGATCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTAAGTAATCAGCTACGTGTTGATCAAGCAATTCTCACAGGTGAGAGCTGCTCTGTTGAAAAAGAGCTCGAGTCCACAACAGCAGTAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGAACAGTGGTGGTTGCTGGCAGGGCACGTGCTGTTGTGGTAGGGGTTGGTGCAAATACTGCCATGGGCAATATACGAGATTTTATATTGCAAACAGATGATGAGGCGACACCATTGAAAAAGAAGCTAGATGAATTTGGAACTTTTCTGGCCAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCTCATGGTGGGGTTTTGAGTGGTGCAATACATTACTTCAAGATTGCTGTTGCTCTTGCTGTTGCGGCCATTCCTGAAGGACTTCCTGCCGTTGTCACAACGTGTTTAGCTCTTGGCACCAAACGAATGGCACGTCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATCTGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCTGTCTCAAAGATTTGTGTGGTCCACTCTGTTTTGCATGGTCCACAACTTTCTGAGTACAGTGTCAGTGGTACAACATATGCTCCTGATGGTATTATTTTTGACACCAGGGGACTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATCCTACACATGGCAATGGGCTCTGCCCTCTGCAACGAGTCTACTTTGCAATATAATCCAGACAAGGGGAGCTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTTCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCAATGCCTTCTGCTCTACATATGCTAAGCAAGCATGAGCGTGCATCCTATTGTAACCATCATTGGGAGAGCCAGTTCAAAAAGATTTCTGTATTGGAGTTTTCTCATGATCGCAAGATGTTGAGCATTTTATGTAGCAGAAACCAGTCACATATCCTATTCTCCAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGTATCCTTTGCAATGAAGATGGTTCCACTAGTGTTTTAACTTCTAGCATTCGTGATGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCATTCAAATTGCTTCCTGTGAGTCAGCAGAGTTTATCCTTTGATGATGAGCAAGACCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACCGCGGGCATACGTGTTATAGTTGTTACTGGGGATAATAAGTCAACTGCTGAATCACTATGCCGCAAGATTGGTGCCTTTGATCACTTGGTAGATCTAACTGGTCATTCTTTTACTGCTTCTGAATTTGAAGAGCTACCTGCAGTGCAACAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAGCCTTCTCATAAGAGAATGCTTGTGGAGGCTTTACAACATCAGAATGAAGTGGTTGCTATGACAGGTGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCAGATATCGGAATTGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTACTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAACAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTTTGTATATTTGTGGCTGCTGTTCTTGGAATACCAGAGACTCTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAATAAGCAAGACTCTGATGTAATGAAAGCCAAACCTCGAAAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATTGGAGTTTATGTTGGTCTTGCAACAGTTGCTGGCTTCATATGGTGGTTTATATACTCTGACAGTGGTCCTAAGCTAACTTACACCGAGTTGATGAATTTTGATACTTGCTCAACAAGAGAGACAACATACCCATGCAGTATATTTGAGGATCGGCATCCATCGACTGTGTCTATGACTGTACTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAACCTAAGTGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATCTATGGCTAGTTGCCTCCATTGTCTTAACCATGATCCTTCACATGCTTATTATGTATGTGCGACCACTCGCGGTTCTTTTCTCTGTAACGCCATTATCTTGGACCGAATGGACGATGATATTATATCTTTCATTTCCTGTTATAATTATTGATGAGGTACTAAAGTTCTTTTCGCGACGCTCTACTGGCAGGTTGAGGCTTCCATTCAGATTCAGAAGGCATGATTTACTTCCGAAGAAGGAATTACATGACAAGTAG 3147 42.29 MGRKVYKIHFFFLFGSQAAFAVRNIIWKQQVAANSTLAFSEATHSEMEDAYARSITEVLDFFGVDPSQGLTDDQVLHHAKIYGKNVLPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGCFSILPATDLVPGDIVEVAVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELESTTAVNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGNIRDFILQTDDEATPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYSVSGTTYAPDGIIFDTRGLQLEFPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALHMLSKHERASYCNHHWESQFKKISVLEFSHDRKMLSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTSSIRDELEARFQSFAGNEMLRCLAIAFKLLPVSQQSLSFDDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTGHSFTASEFEELPAVQQTMALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGVYVGLATVAGFIWWFIYSDSGPKLTYTELMNFDTCSTRETTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVLTMILHMLIMYVRPLAVLFSVTPLSWTEWTMILYLSFPVIIIDEVLKFFSRRSTGRLRLPFRFRRHDLLPKKELHDK 1048
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 1908518 1938397 - Lag0004206.1 Lac6g0237 610006
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0237 1048 SFLD Haloacid Dehalogenase 372 789 - -
Lac6g0237 1048 Gene3D - 388 781 IPR023214 -
Lac6g0237 1048 PANTHER CALCIUM-TRANSPORTING ATPASE 54 1024 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
Lac6g0237 1048 Gene3D - 68 283 - -
Lac6g0237 1048 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 398 635 IPR023299 GO:0000166(InterPro)
Lac6g0237 1048 Pfam Cation transporting ATPase, C-terminus 821 1020 IPR006068 -
Lac6g0237 1048 SUPERFAMILY Calcium ATPase, transduction domain A 170 281 IPR008250 -
Lac6g0237 1048 ProSitePatterns E1-E2 ATPases phosphorylation site. 393 399 IPR018303 -
Lac6g0237 1048 Pfam Cation transport ATPase (P-type) 461 570 - -
Lac6g0237 1048 Pfam haloacid dehalogenase-like hydrolase 628 751 - -
Lac6g0237 1048 NCBIfam HAD-IC family P-type ATPase 707 825 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g0237 1048 NCBIfam HAD-IC family P-type ATPase 138 413 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g0237 1048 FunFam Calcium-transporting ATPase 401 638 - -
Lac6g0237 1048 Gene3D - 401 638 IPR023299 GO:0000166(InterPro)
Lac6g0237 1048 Gene3D - 101 1022 - -
Lac6g0237 1048 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 1024 IPR023298 -
Lac6g0237 1048 SUPERFAMILY HAD-like 389 840 IPR036412 -
Lac6g0237 1048 NCBIfam calcium-translocating P-type ATPase, SERCA-type 99 891 IPR005782 GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro)
Lac6g0237 1048 Pfam E1-E2 ATPase 168 370 - -
Lac6g0237 1048 Pfam Cation transporter/ATPase, N-terminus 51 118 IPR004014 -
Lac6g0237 1048 FunFam Sodium/potassium-transporting ATPase subunit alpha 630 776 - -
Lac6g0237 1048 PRINTS P-type cation-transporting ATPase superfamily signature 760 772 - -
Lac6g0237 1048 PRINTS P-type cation-transporting ATPase superfamily signature 737 756 - -
Lac6g0237 1048 PRINTS P-type cation-transporting ATPase superfamily signature 219 233 - -
Lac6g0237 1048 PRINTS P-type cation-transporting ATPase superfamily signature 391 405 - -
Lac6g0237 1048 PRINTS P-type cation-transporting ATPase superfamily signature 631 642 - -
Lac6g0237 1048 PRINTS P-type cation-transporting ATPase superfamily signature 653 663 - -
Lac6g0237 1048 FunFam Calcium-transporting ATPase 158 283 - -
Lac6g0237 1048 PRINTS H+-transporting ATPase (proton pump) signature 709 725 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g0237 1048 PRINTS H+-transporting ATPase (proton pump) signature 768 793 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g0237 1048 PRINTS H+-transporting ATPase (proton pump) signature 737 753 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g0237 1048 SMART Cation_ATPase_N_a_2 49 123 IPR004014 -
Lac6g0237 1048 FunFam Calcium-transporting ATPase, putative 256 387 - -
Lac6g0237 1048 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 732 1026 - -
Lac6g0237 1048 SFLD p-type atpase 372 789 IPR044492 -
Lac6g0237 1048 CDD P-type_ATPase_SERCA 51 1022 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0237 Lac-Chr6:1908518 Lac8g2014 Lac-Chr8:38602625 1.40E-84 dispersed
Lac7g2667 Lac-Chr7:45495116 Lac6g0237 Lac-Chr6:1908518 1.60E-229 transposed
Lac2g0394 Lac-Chr2:2889004 Lac6g0237 Lac-Chr6:1908518 2.90E-81 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0237 K05853 - csv:101211345 1868.59