Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0237 | ATGGGCCGGAAAGTTTACAAGATTCATTTCTTTTTCTTGTTCGGATCTCAAGCAGCATTTGCTGTACGAAACATAATTTGGAAGCAGCAGGTGGCTGCAAACTCCACTCTCGCTTTCAGTGAAGCCACCCATTCGGAAATGGAGGACGCCTATGCCAGATCTATCACTGAGGTTTTGGATTTTTTTGGGGTTGACCCATCACAAGGTCTTACAGACGATCAGGTTTTGCATCATGCTAAAATTTATGGAAAAAACGTGCTACCTGAGGAGAAAAGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTAATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCATTTTTGGAACCTTCAGTAATTCTAATGATACTGGCTGCAAATGCAGCAGTAGGAGTGATTACGGAAACAAATGCTGAAAAGGCTCTCGTGGAACTACGGGCATACCAGGCAGATATTGCTACTGTGATGAGAAATGGTTGTTTTTCAATACTTCCGGCTACTGATCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTAAGTAATCAGCTACGTGTTGATCAAGCAATTCTCACAGGTGAGAGCTGCTCTGTTGAAAAAGAGCTCGAGTCCACAACAGCAGTAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGAACAGTGGTGGTTGCTGGCAGGGCACGTGCTGTTGTGGTAGGGGTTGGTGCAAATACTGCCATGGGCAATATACGAGATTTTATATTGCAAACAGATGATGAGGCGACACCATTGAAAAAGAAGCTAGATGAATTTGGAACTTTTCTGGCCAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCTCATGGTGGGGTTTTGAGTGGTGCAATACATTACTTCAAGATTGCTGTTGCTCTTGCTGTTGCGGCCATTCCTGAAGGACTTCCTGCCGTTGTCACAACGTGTTTAGCTCTTGGCACCAAACGAATGGCACGTCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATCTGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCTGTCTCAAAGATTTGTGTGGTCCACTCTGTTTTGCATGGTCCACAACTTTCTGAGTACAGTGTCAGTGGTACAACATATGCTCCTGATGGTATTATTTTTGACACCAGGGGACTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATCCTACACATGGCAATGGGCTCTGCCCTCTGCAACGAGTCTACTTTGCAATATAATCCAGACAAGGGGAGCTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTTCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCAATGCCTTCTGCTCTACATATGCTAAGCAAGCATGAGCGTGCATCCTATTGTAACCATCATTGGGAGAGCCAGTTCAAAAAGATTTCTGTATTGGAGTTTTCTCATGATCGCAAGATGTTGAGCATTTTATGTAGCAGAAACCAGTCACATATCCTATTCTCCAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGTATCCTTTGCAATGAAGATGGTTCCACTAGTGTTTTAACTTCTAGCATTCGTGATGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCATTCAAATTGCTTCCTGTGAGTCAGCAGAGTTTATCCTTTGATGATGAGCAAGACCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACCGCGGGCATACGTGTTATAGTTGTTACTGGGGATAATAAGTCAACTGCTGAATCACTATGCCGCAAGATTGGTGCCTTTGATCACTTGGTAGATCTAACTGGTCATTCTTTTACTGCTTCTGAATTTGAAGAGCTACCTGCAGTGCAACAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAGCCTTCTCATAAGAGAATGCTTGTGGAGGCTTTACAACATCAGAATGAAGTGGTTGCTATGACAGGTGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCAGATATCGGAATTGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTACTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAACAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTTTGTATATTTGTGGCTGCTGTTCTTGGAATACCAGAGACTCTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAATAAGCAAGACTCTGATGTAATGAAAGCCAAACCTCGAAAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATTGGAGTTTATGTTGGTCTTGCAACAGTTGCTGGCTTCATATGGTGGTTTATATACTCTGACAGTGGTCCTAAGCTAACTTACACCGAGTTGATGAATTTTGATACTTGCTCAACAAGAGAGACAACATACCCATGCAGTATATTTGAGGATCGGCATCCATCGACTGTGTCTATGACTGTACTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAACCTAAGTGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATCTATGGCTAGTTGCCTCCATTGTCTTAACCATGATCCTTCACATGCTTATTATGTATGTGCGACCACTCGCGGTTCTTTTCTCTGTAACGCCATTATCTTGGACCGAATGGACGATGATATTATATCTTTCATTTCCTGTTATAATTATTGATGAGGTACTAAAGTTCTTTTCGCGACGCTCTACTGGCAGGTTGAGGCTTCCATTCAGATTCAGAAGGCATGATTTACTTCCGAAGAAGGAATTACATGACAAGTAG | 3147 | 42.29 | MGRKVYKIHFFFLFGSQAAFAVRNIIWKQQVAANSTLAFSEATHSEMEDAYARSITEVLDFFGVDPSQGLTDDQVLHHAKIYGKNVLPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGCFSILPATDLVPGDIVEVAVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELESTTAVNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGNIRDFILQTDDEATPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYSVSGTTYAPDGIIFDTRGLQLEFPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALHMLSKHERASYCNHHWESQFKKISVLEFSHDRKMLSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTSSIRDELEARFQSFAGNEMLRCLAIAFKLLPVSQQSLSFDDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTGHSFTASEFEELPAVQQTMALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGVYVGLATVAGFIWWFIYSDSGPKLTYTELMNFDTCSTRETTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVLTMILHMLIMYVRPLAVLFSVTPLSWTEWTMILYLSFPVIIIDEVLKFFSRRSTGRLRLPFRFRRHDLLPKKELHDK | 1048 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1908518 | 1938397 | - | Lag0004206.1 | Lac6g0237 | 610006 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0237 | 1048 | SFLD | Haloacid Dehalogenase | 372 | 789 | - | - | |
| Lac6g0237 | 1048 | Gene3D | - | 388 | 781 | IPR023214 | - | |
| Lac6g0237 | 1048 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 54 | 1024 | - | GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER) | |
| Lac6g0237 | 1048 | Gene3D | - | 68 | 283 | - | - | |
| Lac6g0237 | 1048 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 398 | 635 | IPR023299 | GO:0000166(InterPro) | |
| Lac6g0237 | 1048 | Pfam | Cation transporting ATPase, C-terminus | 821 | 1020 | IPR006068 | - | |
| Lac6g0237 | 1048 | SUPERFAMILY | Calcium ATPase, transduction domain A | 170 | 281 | IPR008250 | - | |
| Lac6g0237 | 1048 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 393 | 399 | IPR018303 | - | |
| Lac6g0237 | 1048 | Pfam | Cation transport ATPase (P-type) | 461 | 570 | - | - | |
| Lac6g0237 | 1048 | Pfam | haloacid dehalogenase-like hydrolase | 628 | 751 | - | - | |
| Lac6g0237 | 1048 | NCBIfam | HAD-IC family P-type ATPase | 707 | 825 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g0237 | 1048 | NCBIfam | HAD-IC family P-type ATPase | 138 | 413 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g0237 | 1048 | FunFam | Calcium-transporting ATPase | 401 | 638 | - | - | |
| Lac6g0237 | 1048 | Gene3D | - | 401 | 638 | IPR023299 | GO:0000166(InterPro) | |
| Lac6g0237 | 1048 | Gene3D | - | 101 | 1022 | - | - | |
| Lac6g0237 | 1048 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 47 | 1024 | IPR023298 | - | |
| Lac6g0237 | 1048 | SUPERFAMILY | HAD-like | 389 | 840 | IPR036412 | - | |
| Lac6g0237 | 1048 | NCBIfam | calcium-translocating P-type ATPase, SERCA-type | 99 | 891 | IPR005782 | GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro) | |
| Lac6g0237 | 1048 | Pfam | E1-E2 ATPase | 168 | 370 | - | - | |
| Lac6g0237 | 1048 | Pfam | Cation transporter/ATPase, N-terminus | 51 | 118 | IPR004014 | - | |
| Lac6g0237 | 1048 | FunFam | Sodium/potassium-transporting ATPase subunit alpha | 630 | 776 | - | - | |
| Lac6g0237 | 1048 | PRINTS | P-type cation-transporting ATPase superfamily signature | 760 | 772 | - | - | |
| Lac6g0237 | 1048 | PRINTS | P-type cation-transporting ATPase superfamily signature | 737 | 756 | - | - | |
| Lac6g0237 | 1048 | PRINTS | P-type cation-transporting ATPase superfamily signature | 219 | 233 | - | - | |
| Lac6g0237 | 1048 | PRINTS | P-type cation-transporting ATPase superfamily signature | 391 | 405 | - | - | |
| Lac6g0237 | 1048 | PRINTS | P-type cation-transporting ATPase superfamily signature | 631 | 642 | - | - | |
| Lac6g0237 | 1048 | PRINTS | P-type cation-transporting ATPase superfamily signature | 653 | 663 | - | - | |
| Lac6g0237 | 1048 | FunFam | Calcium-transporting ATPase | 158 | 283 | - | - | |
| Lac6g0237 | 1048 | PRINTS | H+-transporting ATPase (proton pump) signature | 709 | 725 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g0237 | 1048 | PRINTS | H+-transporting ATPase (proton pump) signature | 768 | 793 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g0237 | 1048 | PRINTS | H+-transporting ATPase (proton pump) signature | 737 | 753 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g0237 | 1048 | SMART | Cation_ATPase_N_a_2 | 49 | 123 | IPR004014 | - | |
| Lac6g0237 | 1048 | FunFam | Calcium-transporting ATPase, putative | 256 | 387 | - | - | |
| Lac6g0237 | 1048 | FunFam | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 732 | 1026 | - | - | |
| Lac6g0237 | 1048 | SFLD | p-type atpase | 372 | 789 | IPR044492 | - | |
| Lac6g0237 | 1048 | CDD | P-type_ATPase_SERCA | 51 | 1022 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g0237 | Lac-Chr6:1908518 | Lac8g2014 | Lac-Chr8:38602625 | 1.40E-84 | dispersed | |
| Lac7g2667 | Lac-Chr7:45495116 | Lac6g0237 | Lac-Chr6:1908518 | 1.60E-229 | transposed | |
| Lac2g0394 | Lac-Chr2:2889004 | Lac6g0237 | Lac-Chr6:1908518 | 2.90E-81 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g0237 | K05853 | - | csv:101211345 | 1868.59 |