Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0246 ATGCTGTGCGCTTGTTCGGGAGAGCAATTTAAGTTCGAAGAGCCACCGCAGTCCCCAGAGTCACTTGCTACGAGGGATTTCTCGGCCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTAAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCCCTCTCATTGAACTACGAGGAAGCCAGAGCTTTGCTGGGGAGGCTTGAGTATCAAAGAGGAAATTTTGATGCTGCCCTACAGGTATTTCAGGGTATAGACATTAAATCTTTAACGCCAAGAATGATTAAGGCAATAGCTGGAAAGATAAGGGAGGAAAAGCCTCGACATAAAGGTGACAGTGCACCCCCTAGTGGTGGAATGTCCATGCATTCTGTTAGTCTACTACTTGAAGCAATTTTACTGAAGGCAAAATCACTGGAGGAACTTGGCAGATATATAGAGTCTGCAAAAGAGTGCAGGATAATACTTGATACAGTGGAATCAGCTTTGCCTAATGGAATGCCCGAGTGTATTGGTGAAGACTGCAAATTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTACCTACTTTGTGGATTAAAGGAGGGTATCTTGACGAGGCCATAAATGCCTATCGCCGGGTCCTTGTTAAACCATGGAATTTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGCACATTACTCTATGGAGGTGTTGAAGCAAGCCTTCCTCTTAAGTTTCATGTATTCGGTCCAAGAACACCTAAAAACAATGTAGAAGAAGCAATCCTTTTGTTGCTAATACTCATGAAGAAGGTGGTGATGCAGGAAATAAGCTGGGATCCAGAGATTATGAATCATCTGACTTATGCACTTTCTATCACTAGACAATTTGAATTACTTGCTGAGCATGTGGAGCAGATCCTTCCTGGAATATATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACAATGCAGCAGGACAGAATGAAGCAGCTTTGAACCTTCTAACGAAGGTTTGCGGTTCCTCTGAAGTGAAGCACGAGCCCCATTTCCATTCTTTTTTGTTGCTTGCAAAATTGTGTTCAGAGGATTCAAAATGCGCATGTGATGGAATTAAATTTGCTCGTAGAATGATCGATATGGCCAGTGAACAAAGTAAACATTTCAATTCTGAAGCCCACAAATTTTTAGGTGTTTGCTATGGGAATGCAGCTAGAGCTTCTGTATCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCCCTACGAGTTTCTTCTCTCACTGGGAGGCATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCCGTGCAGAGAAATCTCGATGTCGCCTTCTACAGTGCAATGGCATACTCAAATATGGTGGCTGATGGTTCCGGGAGAGGTTGGAAGCTTTTGGCCCTCATACTTTCAGCTGAGAGGCGACTCAAGGACGCTGAAACCATAGTTGATTTTGCTTTGGATGAAGCGGAGAGGATGGATCAACTGGATTTTCTTCGATTGAAAGCTGTACTCAAAGTTACTCAGGAACAGCCAAAGCAAGCAATAGAAACTTACAGAGTCTTGCTAGCTCTAATTCAAGCACGAGAAGAACTTCAGCTTCAGGCTAAGAACTTTGACCAATCCAAGGACTTGGAACTTGAGGCAGCGGGAGAACGTAACTTGGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCGAAACTTGCTTCCTGGGGGGATGCAGAGATTTGTCTGAATAAAGCCAAGTCATTAGATGTTCATTGCCCCAGAGGTTGGCATGCAACAGGCAAGTATTTTGAAGCTCGCTCATTACACAAGGAAGCCCTTGTTTCATTCTCAGTCTCTCTATCGATAGATCCTGATTATGTTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAGTGCAGTACTCGATCACTTCCGATTGCACGCAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGACTTCTCTCCAAAATGGAAGGACTGTTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTCCAACTATCTGCTCCTCCTCAGAGTTTCGTCTAA 2151 43.33 MLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKSLTPRMIKAIAGKIREEKPRHKGDSAPPSGGMSMHSVSLLLEAILLKAKSLEELGRYIESAKECRIILDTVESALPNGMPECIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAILLLLILMKKVVMQEISWDPEIMNHLTYALSITRQFELLAEHVEQILPGIYSRAERWYFLALCYNAAGQNEAALNLLTKVCGSSEVKHEPHFHSFLLLAKLCSEDSKCACDGIKFARRMIDMASEQSKHFNSEAHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLTGRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLALILSAERRLKDAETIVDFALDEAERMDQLDFLRLKAVLKVTQEQPKQAIETYRVLLALIQAREELQLQAKNFDQSKDLELEAAGERNLERAAWQDLAAIYSKLASWGDAEICLNKAKSLDVHCPRGWHATGKYFEARSLHKEALVSFSVSLSIDPDYVPSIISTAEVLMKCSTRSLPIARSLLMNAVRLDPTSHEAWFNLGLLSKMEGLLLQAADFFQAAHELQLSAPPQSFV 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1984793 1987531 - Lag0004215.1 Lac6g0246 610015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0246 716 Gene3D Tetratricopeptide repeat domain 29 244 IPR011990 GO:0005515(InterPro)
Lac6g0246 716 Gene3D Tetratricopeptide repeat domain 258 544 IPR011990 GO:0005515(InterPro)
Lac6g0246 716 Pfam Tetratricopeptide repeat 53 90 - -
Lac6g0246 716 Coils Coil 485 505 - -
Lac6g0246 716 SMART tpr_5 677 710 IPR019734 GO:0005515(InterPro)
Lac6g0246 716 SMART tpr_5 573 606 IPR019734 GO:0005515(InterPro)
Lac6g0246 716 SMART tpr_5 318 351 IPR019734 GO:0005515(InterPro)
Lac6g0246 716 SMART tpr_5 476 509 IPR019734 GO:0005515(InterPro)
Lac6g0246 716 SMART tpr_5 607 640 IPR019734 GO:0005515(InterPro)
Lac6g0246 716 Gene3D Tetratricopeptide repeat domain 545 714 IPR011990 GO:0005515(InterPro)
Lac6g0246 716 SUPERFAMILY TPR-like 47 344 IPR011990 GO:0005515(InterPro)
Lac6g0246 716 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Lac6g0246 716 SUPERFAMILY TPR-like 479 707 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2593 Lac-Chr11:41923014 Lac6g0246 Lac-Chr6:1984793 4.80E-153 dispersed
Lac6g0246 Lac-Chr6:1984793 Lac7g0564 Lac-Chr7:4460765 1.80E-157 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0246 K21843 - csv:101209448 1284.24