Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0252 ATGGAGGCTTTGGGAGCTTTCTCTGATGGGGAATGGGATTCTTTCACCGCCATGTTCTCATCCCTTCAAGAGCTCGACCATTCCACCGAGCTTCAATTGCCCAACAATGGCGGCTCCGAATGGTTCTATTCATTGGACGCCTTCGATCCCAATTTGCAGAGCTGCAGCAGCTGCAGTACTGATAATTCAAGTGGTAGTCTTTTCTTGACGAATTCCAGTACTGATTCGTTTGTGCCAATTGATGAGAGGAATTTTGGGTCGTCGTTTTTTTCTGATGTTTTCATGGAGGAAGTGGACGAGGGTCTCGCCGGCGCCGGTGAGAGATTGCCGCCGCCGCAGCTTGTGGATTCCGGCGTTGCGGGAAAGGAACCAAAACCAATGGCATTGAAGAGGAAAGTCAGTGAGGGAAAGTTTTGTGATAATCCGAAGAAGAAAAGTCGGGTGTCAGGAGATGCAGAAAAGAAGAAGAAAGGGCAGAAGAGAAGAGGAGAAAGCGGTGAGGAAGAAGGGAATAATGGAGAAGAACAGAGCTCGATAAGTTACAGTTCAGAGGAAGAAAGTGGTTTGAAAGAGAAGAGCAGAGCCAGCAGAGGATCGGCCACAGATCCCCAAAGCCTCTACGCCAGAAAACGCAGAGAGAGAATCAATGAGCGATTGAGAATCTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATTAGTACTATGCTTGAGGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGCTTTGGATGTTTGCTCCTTTGGCTTACAATGGAATGGACCTTGGTCTTAACCAGAAGCTCTCTCCATTTCTATCACATTGA 858 46.62 MEALGAFSDGEWDSFTAMFSSLQELDHSTELQLPNNGGSEWFYSLDAFDPNLQSCSSCSTDNSSGSLFLTNSSTDSFVPIDERNFGSSFFSDVFMEEVDEGLAGAGERLPPPQLVDSGVAGKEPKPMALKRKVSEGKFCDNPKKKSRVSGDAEKKKKGQKRRGESGEEEGNNGEEQSSISYSSEEESGLKEKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMFAPLAYNGMDLGLNQKLSPFLSH 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2037952 2039889 - Lag0004221.1 Lac6g0252 610021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0252 285 MobiDBLite consensus disorder prediction 125 169 - -
Lac6g0252 285 MobiDBLite consensus disorder prediction 104 210 - -
Lac6g0252 285 FunFam Basic helix-loop-helix transcription factor 200 257 - -
Lac6g0252 285 Pfam Helix-loop-helix DNA-binding domain 209 249 IPR011598 GO:0046983(InterPro)
Lac6g0252 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 260 IPR036638 GO:0046983(InterPro)
Lac6g0252 285 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 50 271 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac6g0252 285 Gene3D - 200 257 IPR036638 GO:0046983(InterPro)
Lac6g0252 285 CDD bHLH_AtIND_like 200 262 - -
Lac6g0252 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983(InterPro)
Lac6g0252 285 SMART finulus 205 254 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0252 Lac-Chr6:2037952 Lac6g2849 Lac-Chr6:46113787 1.70E-13 dispersed
Lac8g1945 Lac-Chr8:37821383 Lac6g0252 Lac-Chr6:2037952 2.20E-18 transposed
Lac1g2580 Lac-Chr1:47142379 Lac6g0252 Lac-Chr6:2037952 1.80E-08 wgd
Lac12g0175 Lac-Chr12:1962102 Lac6g0252 Lac-Chr6:2037952 4.10E-37 wgd
Lac2g0427 Lac-Chr2:3116135 Lac6g0252 Lac-Chr6:2037952 3.00E-08 wgd
Lac2g0387 Lac-Chr2:2845294 Lac6g0252 Lac-Chr6:2037952 2.40E-43 wgd
Lac5g2599 Lac-Chr5:44432947 Lac6g0252 Lac-Chr6:2037952 1.70E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23972 PF00010 HLH 7.90E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0252 - - - 0.0